Ochl013292.1
Basic Information
- Insect
- Ornithomya chloropus
- Gene Symbol
- -
- Assembly
- GCA_963971445.1
- Location
- OZ020531.1:17887201-17906443[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 8.3 6.8e+02 1.4 1.2 12 23 2 14 1 14 0.91 2 22 0.0088 0.73 10.8 0.3 3 23 79 99 77 99 0.97 3 22 0.017 1.4 9.9 2.8 1 23 211 233 211 233 0.95 4 22 0.041 3.4 8.7 6.5 5 23 246 264 238 264 0.92 5 22 0.0026 0.22 12.4 0.1 1 23 378 401 378 401 0.98 6 22 0.017 1.4 9.9 2.8 1 23 532 554 532 554 0.95 7 22 0.0098 0.81 10.7 4.5 5 23 567 585 559 585 0.92 8 22 0.0026 0.22 12.4 0.1 1 23 699 722 699 722 0.98 9 22 0.017 1.4 9.9 2.8 1 23 853 875 853 875 0.95 10 22 0.041 3.4 8.7 6.5 5 23 888 906 880 906 0.92 11 22 0.0026 0.22 12.4 0.1 1 23 1020 1043 1020 1043 0.98 12 22 0.017 1.4 9.9 2.8 1 23 1174 1196 1174 1196 0.95 13 22 0.041 3.4 8.7 6.5 5 23 1209 1227 1201 1227 0.92 14 22 0.00055 0.045 14.6 3.4 1 23 1365 1387 1365 1387 0.98 15 22 0.0028 0.23 12.4 10.5 1 23 1393 1415 1393 1415 0.96 16 22 0.00047 0.039 14.8 5.6 1 23 1421 1443 1421 1443 0.98 17 22 0.42 34 5.5 0.4 1 10 1449 1458 1449 1461 0.93 18 22 6.1e-05 0.0051 17.6 0.5 1 23 1465 1487 1465 1487 0.97 19 22 1e-05 0.00084 20.0 0.2 1 23 1493 1515 1493 1515 0.98 20 22 0.00035 0.029 15.2 2.0 1 23 1520 1543 1520 1543 0.97 21 22 0.002 0.17 12.8 0.4 1 23 1549 1572 1549 1572 0.91 22 22 2.1 1.7e+02 3.3 0.2 3 19 1649 1665 1647 1665 0.94
Sequence Information
- Coding Sequence
- ATGACCAAGGCCGATTTGAATCATCACATACGCAGCACACATGGTGGAATTAATCCAAATTCTTCGACTACGGCCATAGTATCAAGCAATCCCATGATTAGTGCTCAGCAAAATACCCAAACTATACAGCAAGTACATCAGACTCAGgcacagcaacagcagcaacaacaacaccagaaTCATCCACAAACCATGGATGTAACCGCAAACGATCCGAACAGACCTCAGTATGGTTGTCGTGAATGTGGAAGTGCCTTCAATAGTCGCGAAACATTCGCTTTACATCAACGTTTGCATACAGGCGATAAAAATCTTATGACCGATTTGTGTGCTTTGACGGCCGCTTTGCCGCCGCACTTCTTAAGCACGGCCAGCTTGCAGCCGGGCGGTACAACGGTGGTGACCGCCAATCCCAGCATTATAGCCCAAAATCAAATGCCAGTTCAAATCATATCATCGACCGGTCAGGTTATGTCGCAAACAACTTTAGTGCAGGCCGCCGCCACAACAAATCCCCATTCAGTGGTTGCTGCTGTGCCCGCTGCCGTCACCGTACAGCCCACACATCAACAGCATCAGCATGCGGCTGCACCGCAACATCAACAGCAGGCTCAGAATAAACCGAAGTCACATTTTTGTGCCAGTTGTGGTAAAGGATTTGCCGTCAAACATGGCCTCATGCAGCATAATCGCCGTCATCCGAACGGTGGCTGCACCGTACACACTCACGTGTGCGAGTGTGGCAAGGCGTTCtttcaaaagaatcatttaatGTTGCATCAGCGCCAACATTTGGATACAATATCAAATATACAACAGCAaacgcaacagcaacaacaacagcagcagaagcagcaacaacagATGCCTTATCTGTTATCAACGGATGGCTCATTAACGGTACAGAAAGATGTAAAAGGTGCTGTGGCGGCCAATAAAGGCGATATATTACCTGGTATCTCAGTGCAAGTGCAAAAAGTCATACAGGGCTTGGAGGATAATGACGAATCACAGGCGGCTGCTCCCAATTTGAAACTAGAACCGGGTACTTTGGAAATATCACCGAAAAATGAACTTCAagataatattaatttcaatgaGGGTGTTGCTACGATTAAGAAAGAACGTCCCTACAGCTGTGAGGATGAATGTGGAAGTGCCTTCAATAGTCGCGAAGCATTCGCTTTACATCAACGTTTGCATACAGGCGATAAAAATCTTGTGACCGATTTGTGTGCTTTGACGGCCGCTTTGCCGCCGCACTTCTTAAGCACGGCCAGCTTGCAGCCGGGCGGTACAACGGTGGTGGCCGCCAATCCCAGCATTATAGCCCAAAATCAAATACCAGTTCAAATCATATCATCGACCGGTCAGGTTATGTCGCAAACAACTTTAGTGCAGGCCGCCGCCACAACAAATCCCCATTCAGTGGTTGCTGCTGTGCCCGCTGCCGTCACCGTACAGCCCACACATCAACAGCATCAGCATGCCGCTCAACAGTTGGCAAATGGTACGGCGGCTGgccatcaacaacaacaacagcaggcGGCTGCACCGCAACATCAACAGCAGGCTCAGAATAAACCGAAGTCACATTTTTGTGCCAGTTGTGGTAAAGGATTTGCCGTCAAACATGGCCTCATGCAGCATAATCGCCGTCATCCGAACGGTGGCTGCACCGTACACACTTACGTGTGCGAGTGTGGCAAGGCGTTCtttcaaaagaatcatttaatGTTGCATCAGCGCCAACATTTGGATACAATATCAAATATACAACAGCAaacgcaacagcaacaacaacagcagcagaagcagcaacaacagATGCCTTATCTGTTATCAACGGATGGCTCATTAACGGTACAGAAAGATGTAAAAGGTGCTGTGGCGGCCAATAAAGGCGATATATTACCTGGTATCTCAGTGCAAGTGCAAAAAGTCATACAGGGCTTGGAGGATAATGACGAATCACAGGCGGCTGCTCCCAATTTGAAACTAGAACCGGGTACTTTGGAAATATCACCGAAAAATGAACTTCAagataatattaatttcaatgaGGGTGTTGCTACGATTAAGAAAGAACGTCCCTACAGCTGTGAGGATGAATGTGGAAGTGCCTTCAATAGTCGCGAAGCATTCGCTTTACATCAACGTTTGCATACAGGCGATAAAAATCTTGTGACCGATTTGTGTGCTTTGACGGCCGCTTTGCCGCCGCACTTCTTAAGCACGGCCAGCTTGCAGCCGGGCGGTACAACGGTGGTGGCCGCCAATCCCAGCATTATAGCCCAAAATCAAATGCCAGTTCAAATCATATCATCGACCGGTCAGGTTATGTCGCAAACAACTTTAGTGCAGGCCGCCGCCACAACAAATCCCCATTCAGTGGTTGCTGCTGTGCCCGCTGCCGTCACCGTACAGCCCACACATCAACAGCATCAGCATGCCGCTCAACAGTTGGCAAATGGTACGGCGGCTGgccatcaacaacaacaacagcaggcGGCTGCACCGCAACATCAACAGCAGGCTCAGAATAAACCGAAGTCACATTTTTGTGCCAGTTGTGGTAAAGGATTTGCCGTCAAACATGGCCTCATGCAGCATAATCGCCGTCATCCGAACGGTGGCTGCACCGTACACACTCACGTGTGCGAGTGTGGCAAGGCGTTCtttcaaaagaatcatttaatGTTGCATCAGCGCCAACATTTGGATACAATATCAAATATACAACAGCAaacgcaacagcaacaacaacagcagcagaagcagcaacaacagATGCCTTATCTGTTATCAACGGATGGCTCATTAACGGTACAGAAAGATGTAAAAGGTGCTGTGGCGGCCAATAAAGGCGATATATTACCTGGTATCTCAGTGCAAGTGCAAAAAGTCATACAGGGCTTGGAGGATAATGACGAATCACAGGCGGCTGCTCCCAATTTGAAACTAGAACCGGGTACTTTGGAAATATCACCGAAAAATGAACTTCAagataatattaatttcaatgaGGGTGTTGCTACGATTAAGAAAGAACGTCCCTACAGCTGTGAGGATGAATGTGGAAGTGCCTTCAATAGTCGCGAAGCATTCGCTTTACATCAACGTTTGCATACAGGCGATAAAAATCTTGTGACCGATTTGTGTGCTTTGACGGCCGCTTTGCCGCCGCACTTCTTAAGCACGGCCAGCTTGCAGCCGGGCGGTACAACGGTGGTGGCCGCCAATCCCAGCATTATAGCCCAAAATCAAATGCCAGTTCAAATCATATCATCGACCGGTCAGGTTATGTCGCAAACAACTTTAGTGCAGGCCGCCGCCACAACAAATCCCCATTCAGTGGTTGCTGCTGTGCCCGCTGCCGTCACCGTACAGCCCACACATCAACAGCATCAGCATGCCGCTCAACAGTTGGCAAATGGTACGGCGGCTGgccatcaacaacaacaacagcaggcGGCTGCACCGCAACATCAACAGCAGGCTCAGAATAAACCGAAGTCACATTTTTGTGCCAGTTGTGGTAAAGGATTTGCCGTCAAACATGGCCTCATGCAGCATAATCGCCGTCATCCGAACGGTGGCTGCACCGTACACACTCACGTGTGCGAGTGTGGCAAGGCGTTCtttcaaaagaatcatttaatGTTGCATCAGCGCCAACATTTGGATACAATATCAAATATACAACAGCAaacgcaacagcaacaacaacagcagcagaagcagcaacaacagATGCCTTATCTGTTATCAACGGATGGCTCATTAACGGTACAGAAAGATGTAAAAGGTGCTGTGGCGGCCAATAAAGGTGTGGTTCGTCGCATGGTATTAGTAAATGATCCATTTACCACCGGAGCCCAAAGTTCGAAAATGGCTTCATGCGATATATTACCTGGTATCTCAGTGCAAGTGCAAAAAGTCATACAGGGCTTGGAGGATAATGACGAATCACAGGCGGCTGCTCCCAATTTGAAACTAGAACCGGGTACTTTGGAAATATCACCGAAAAATGAACTTCAagataatattaatttcaatgaGGGTGTTGCTACGATTAAGAAAGAACGTCCCTACAGCTGTGAGGAGTGCGGTAAATCGTTTCTGTTAAAACATCATTTGACCACGCATGCCCGTGTTCATACCGGTGAACGTCCCCACATATGCACCCACTGTGGCAAAAGCTTCGCTCACAAACATTGCCTCAACACACATTTGCTGTTGCACTCCACCGATCGTCGGTATCAGTGTGTTGAGTGCAAGAAAAGTTTCACCTTGAAACATCATTTGTTGACACATTCACGTGTCCATTCACGCGATCGTCCCTTTGTATGTCAAGAATGCGGACGGACATTTCATGCTGGCGAACGACCTTACGTGTGCGAAGAGTGCGGTGAAAGTTTCGCCCAAGAGAATCATCTTATTATGCATTCACGATTCCATGGCTCAATTAATCTGTTTGTATGCCAAGACTGTGGTGTGACATTTCCCCGCAAGTTTCAACTGGTCAATCATGCACGCATTCATGGCAAAATACCTCATTCATGCACTGTTTGCGGCAAAGAGTTCTTACAGAAACGCACTTTAGTATCGCACATGcgTAGAGTACATACTGGGGATCAACCCTACCCTTGTATTAGTTGCGGTGAAGGCTTTATGACCAAGGCCGATTTGAATCATCACATACGCAGCACACATGGTGGAATTAATCCAAATTCTTCGACTACGGCCATAGTATCAAGCAATCCCATGATTAGTGCTCAGCAAAATACCCAAACTATACAGCAAGTACATCAGACTCAggcacaacaacagcagcaacaacaacaccagaaTCATCCACAAACCATAACCGTGGTCAGTAGTCCGAATAGTTCGACACTATTAACAGTAACCGCAAACGATCCGAACAGACCTCAGTATGGTTGTCGTGAATGTGGAAGTGCCTTCAATAGTCGCGAAACATTCGCTTTACATTAA
- Protein Sequence
- MTKADLNHHIRSTHGGINPNSSTTAIVSSNPMISAQQNTQTIQQVHQTQAQQQQQQQHQNHPQTMDVTANDPNRPQYGCRECGSAFNSRETFALHQRLHTGDKNLMTDLCALTAALPPHFLSTASLQPGGTTVVTANPSIIAQNQMPVQIISSTGQVMSQTTLVQAAATTNPHSVVAAVPAAVTVQPTHQQHQHAAAPQHQQQAQNKPKSHFCASCGKGFAVKHGLMQHNRRHPNGGCTVHTHVCECGKAFFQKNHLMLHQRQHLDTISNIQQQTQQQQQQQQKQQQQMPYLLSTDGSLTVQKDVKGAVAANKGDILPGISVQVQKVIQGLEDNDESQAAAPNLKLEPGTLEISPKNELQDNINFNEGVATIKKERPYSCEDECGSAFNSREAFALHQRLHTGDKNLVTDLCALTAALPPHFLSTASLQPGGTTVVAANPSIIAQNQIPVQIISSTGQVMSQTTLVQAAATTNPHSVVAAVPAAVTVQPTHQQHQHAAQQLANGTAAGHQQQQQQAAAPQHQQQAQNKPKSHFCASCGKGFAVKHGLMQHNRRHPNGGCTVHTYVCECGKAFFQKNHLMLHQRQHLDTISNIQQQTQQQQQQQQKQQQQMPYLLSTDGSLTVQKDVKGAVAANKGDILPGISVQVQKVIQGLEDNDESQAAAPNLKLEPGTLEISPKNELQDNINFNEGVATIKKERPYSCEDECGSAFNSREAFALHQRLHTGDKNLVTDLCALTAALPPHFLSTASLQPGGTTVVAANPSIIAQNQMPVQIISSTGQVMSQTTLVQAAATTNPHSVVAAVPAAVTVQPTHQQHQHAAQQLANGTAAGHQQQQQQAAAPQHQQQAQNKPKSHFCASCGKGFAVKHGLMQHNRRHPNGGCTVHTHVCECGKAFFQKNHLMLHQRQHLDTISNIQQQTQQQQQQQQKQQQQMPYLLSTDGSLTVQKDVKGAVAANKGDILPGISVQVQKVIQGLEDNDESQAAAPNLKLEPGTLEISPKNELQDNINFNEGVATIKKERPYSCEDECGSAFNSREAFALHQRLHTGDKNLVTDLCALTAALPPHFLSTASLQPGGTTVVAANPSIIAQNQMPVQIISSTGQVMSQTTLVQAAATTNPHSVVAAVPAAVTVQPTHQQHQHAAQQLANGTAAGHQQQQQQAAAPQHQQQAQNKPKSHFCASCGKGFAVKHGLMQHNRRHPNGGCTVHTHVCECGKAFFQKNHLMLHQRQHLDTISNIQQQTQQQQQQQQKQQQQMPYLLSTDGSLTVQKDVKGAVAANKGVVRRMVLVNDPFTTGAQSSKMASCDILPGISVQVQKVIQGLEDNDESQAAAPNLKLEPGTLEISPKNELQDNINFNEGVATIKKERPYSCEECGKSFLLKHHLTTHARVHTGERPHICTHCGKSFAHKHCLNTHLLLHSTDRRYQCVECKKSFTLKHHLLTHSRVHSRDRPFVCQECGRTFHAGERPYVCEECGESFAQENHLIMHSRFHGSINLFVCQDCGVTFPRKFQLVNHARIHGKIPHSCTVCGKEFLQKRTLVSHMRRVHTGDQPYPCISCGEGFMTKADLNHHIRSTHGGINPNSSTTAIVSSNPMISAQQNTQTIQQVHQTQAQQQQQQQHQNHPQTITVVSSPNSSTLLTVTANDPNRPQYGCRECGSAFNSRETFALH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -