Basic Information

Insect: Ornithomya chloropus
Gene Symbol: -
Assembly: GCA_963971445.1
Location: OZ020529.1:51889803-51891910[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 3.7 3e+02 2.6 4.0 1 23 125 147 125 148 0.93

2 12 0.001 0.084 13.8 1.0 1 23 269 291 269 291 0.96

3 12 0.31 26 5.9 1.8 1 23 297 320 297 320 0.93

4 12 0.00027 0.023 15.5 0.3 1 23 344 367 344 367 0.97

5 12 4.3e-06 0.00035 21.2 0.9 1 23 373 395 373 395 0.98

6 12 9.3e-07 7.7e-05 23.3 3.0 1 23 401 423 401 423 0.98

7 12 1.2e-06 9.6e-05 23.0 2.7 1 23 429 451 429 451 0.96

8 12 0.0017 0.14 13.0 5.5 1 23 457 479 457 479 0.98

9 12 3e-07 2.5e-05 24.9 0.9 1 23 485 507 485 507 0.97

10 12 3.3e-05 0.0028 18.4 3.6 1 23 513 535 513 535 0.99

11 12 1.2e-05 0.00097 19.8 2.6 1 23 541 563 541 563 0.98

12 12 0.0037 0.31 12.0 1.5 1 23 569 591 569 591 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	3.7	3e+02	2.6	4.0	1	23	125	147	125	148	0.93
2	12	0.001	0.084	13.8	1.0	1	23	269	291	269	291	0.96
3	12	0.31	26	5.9	1.8	1	23	297	320	297	320	0.93
4	12	0.00027	0.023	15.5	0.3	1	23	344	367	344	367	0.97
5	12	4.3e-06	0.00035	21.2	0.9	1	23	373	395	373	395	0.98
6	12	9.3e-07	7.7e-05	23.3	3.0	1	23	401	423	401	423	0.98
7	12	1.2e-06	9.6e-05	23.0	2.7	1	23	429	451	429	451	0.96
8	12	0.0017	0.14	13.0	5.5	1	23	457	479	457	479	0.98
9	12	3e-07	2.5e-05	24.9	0.9	1	23	485	507	485	507	0.97
10	12	3.3e-05	0.0028	18.4	3.6	1	23	513	535	513	535	0.99
11	12	1.2e-05	0.00097	19.8	2.6	1	23	541	563	541	563	0.98
12	12	0.0037	0.31	12.0	1.5	1	23	569	591	569	591	0.96

Sequence Information

Coding Sequence: ATGACTTTACATAATATATGTGGACAATTATGTCGTGTTTGTATGTGCAaatcatcgaaatattttaatctaAAGAAGAAGATCCCATTGAATGTTGAAGGTGGCGATGAAGTGGAAATGACATTACAAGATATGCTGGAACAAATCGTACCCACCGTGGTACCTTCTGAAAAGATTGTATTACCTCAAGAAATTTGCCAAACATGTATGGAACAACTGGAAATGCtctataaattttacaaaatgtgtTTGAATACTAACCAgcgtttaattaaaatgtgGGAGGAGACTCAAAGAGATGAATTGTTTAAACCAACAACAGTACACTTGTCTCGTAGTCAAAGAGCGAACGCCCATGAAGatattaaatcattttcatgCGCCATTTGTTTTACTAAGCACATCTCTCGTTATAAGCTAATGAGACATATCGGCCAACATCATCAACCAAAAATTATTCTAGAGAAGCTGTTACcgaatataaaagaaattgaatttcatataaaatcgATACGGATAACAGATAATTTGCAGAAAGAAACTCGTGATGCATTGCAAGAGTACCACATATTGGGAAAATATGCGGATAGTAAGAACCACGCAGCTATTGAATTGAGAAATGATCAAGATTTTCACGGAACTATCTGTcaggaaaatgaaaataattctATCACGAAGCCTTcacatgaaaatataataccgGAGATTGTTCCGTTAAGTCATAATAATacTGAATATACCAAGaagtacaaaaataaatataaaacaaaaagagtcaacgaaaaattgaaaaaaactgGGCTCTTTGCTTGTCCACAGTGTCCGGCCACATTTACGACACTAACGGAACGCCGCAAACATAAAAAGCAACACTCCAGCATGTACCGTTACTTGTGTTTCATATGCAATGACCGGTTCAAATATCCTCATTTGGTGCAAGAACATCAAGTGAGGAGACACGGCTTACAATGTAAtattaaaaggaaaacaaatgacaAAGAGGCGAAaatcaaaagtcaagttaaaaaATATCAGTGCAATTATTGTGCAATGACTTATACGTCGGTGGGTGCTTTGGCGCAACACATGTCCAAACGCCACCCCACCATACAGCCTTATCCGTGTGAGAAATGTAATCAGACTTTTGCAGTTGAAGAACACCTGCGTGTACACATGAATCGTCATAACGGTATTAAAAGTTTCAAGTGTAATCAATGCGAGAAATcatTTGCTTATAAAAGTTCAATGAAGCAACATATGCGTTTGCATACTGGCCGAGTCAACTATTTATGTAGTTTGTGTGGCAAGACATTCCATCGACCTAGCAATTTTATTCAACATATGCAACGTCATGGCAATGAAACGCCCTACAGTTGTCCGCATTGCCCTAAACGTTTTAAATGTCAATCAGATCGCTATATACATATGATGACGCACAACGAGGGTAAAGTTTACAAGTGTCCTATATGTGACAAGAGATTTTCACGTCTTGATActttacaacaacacaaaataCTACATACCGGCTTAAGACGTTACAAATGTAATCAATGTCCAAGGTCATTTGCCAGCGCAGATAATTGCAATCGTCATAAGCGCACGCATACTGGTGAAAAACCttatatatgtgaatattgtGAACGTTCATATTGTCAGCGTAACGATTTGGTTAAACACTGGCGCACTCATTTGGGTGAAAAGGTTTATCGTTGTAAGCAATGTACGGATGCCTTTAAGTTTAATGCCGAATTGAAAAAACACGAATTACAGCATTATCAAAAGGAAATGCAACAAAACACTGTTTCTGTTTGTAATGTGTGA
Protein Sequence: MTLHNICGQLCRVCMCKSSKYFNLKKKIPLNVEGGDEVEMTLQDMLEQIVPTVVPSEKIVLPQEICQTCMEQLEMLYKFYKMCLNTNQRLIKMWEETQRDELFKPTTVHLSRSQRANAHEDIKSFSCAICFTKHISRYKLMRHIGQHHQPKIILEKLLPNIKEIEFHIKSIRITDNLQKETRDALQEYHILGKYADSKNHAAIELRNDQDFHGTICQENENNSITKPSHENIIPEIVPLSHNNTEYTKKYKNKYKTKRVNEKLKKTGLFACPQCPATFTTLTERRKHKKQHSSMYRYLCFICNDRFKYPHLVQEHQVRRHGLQCNIKRKTNDKEAKIKSQVKKYQCNYCAMTYTSVGALAQHMSKRHPTIQPYPCEKCNQTFAVEEHLRVHMNRHNGIKSFKCNQCEKSFAYKSSMKQHMRLHTGRVNYLCSLCGKTFHRPSNFIQHMQRHGNETPYSCPHCPKRFKCQSDRYIHMMTHNEGKVYKCPICDKRFSRLDTLQQHKILHTGLRRYKCNQCPRSFASADNCNRHKRTHTGEKPYICEYCERSYCQRNDLVKHWRTHLGEKVYRCKQCTDAFKFNAELKKHELQHYQKEMQQNTVSVCNV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -