Ochl000216.1
Basic Information
- Insect
- Ornithomya chloropus
- Gene Symbol
- su(Hw)_1
- Assembly
- GCA_963971445.1
- Location
- OZ020529.1:1447533-1450530[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00045 0.037 14.9 1.8 1 20 140 159 140 161 0.94 2 12 5.6e-06 0.00046 20.9 0.4 3 23 212 233 210 233 0.93 3 12 0.059 4.9 8.2 0.4 1 23 239 261 239 261 0.94 4 12 4.4e-06 0.00037 21.2 3.6 1 21 268 288 268 289 0.95 5 12 1.4e-06 0.00012 22.7 1.1 2 23 301 322 300 322 0.97 6 12 3e-05 0.0025 18.6 3.0 1 23 333 355 333 355 0.98 7 12 5.6e-05 0.0047 17.7 0.8 1 23 361 383 361 383 0.97 8 12 1.1e-05 0.00089 20.0 1.1 1 23 389 411 389 411 0.99 9 12 8.9e-07 7.4e-05 23.4 0.2 1 23 417 439 417 439 0.98 10 12 0.00023 0.019 15.8 1.4 1 23 443 465 443 465 0.97 11 12 0.0002 0.017 15.9 0.4 2 22 477 497 476 500 0.90 12 12 3.3 2.7e+02 2.7 0.4 3 23 515 536 513 536 0.93
Sequence Information
- Coding Sequence
- atgaataacaaagagaaagaaaagGCGCAAATTCGTTCTAGTGGTACAAAATCGGATGTAAAAATCCTAAACGAAGAGAAAATCACGAATTCACCTTTAAATTTCCCTATCATGACCTCAGTGCCACTCTCTCCTCCCAAACCCATTACATTGTCTTTAGCTAAACCCAAAACGACAGCAGCATTAAAAAAGCAGAAGAAAATGGATCATTATCTTATGCAAACAATAAAGGGTGAGAAAAATGCAGAGGGTGACGAAGAATTGGAGACAATTGACTTTATTTTAACCGATAccaatgaaattgaaaacacTGCACAGACTAGTGTTGAGACATCCGAAGAACTGAATTTAAgcgatgataatgatgaacaATATGAAGCTTATACGGAAAGTGGCAAAACGGAAGAGATTGTTGAGCATGTATGCGGTAAATGTTATAAAACATTTCGCAGATTGAAGggTTTAAAGAAACATTTAGATTATTGCCGTTTTGACAGTGGGTATCATTTGCGGAAAGctgaaatgttgaaaaatttggAGAAAATTGAAAAGGATGCTGTTATCATGGAAAACAAAGATGTGTGTTTTTGTTGCGGCGAAAGTTATGACACTTATCATtTGGGTCACATAAATTGTCCCGATTGTCCGAAATCATTTAAAACTCAAATGAGTTATGAGCGTCACATATTTATAACACATTCTGAATTGAATGACCATCCGTGTTCCATTTGTAATGCCAAACTGCGCAGTGCCAATTTGTTGAAGTTGCATGAAGAGCAGCACCGCAGCCGTGGCAAACCGTATGCTTGCAAAATATGTGGAAAAGATTTCACACGTTCATACCATTTGCATCGTCATCAGAAATTTTCATCGTGTATGGCTAATGAACATGATTCGATTAAGTGTAAAGTGTGCGATAAGGCTTTTTATCGTTTGGATAATTTGCGGCAACATTTAAAACAACATTTGGGTAATCATGTAACGAAAAAGTCGGAGTATATGTGCCCTATATGTAAGAATTGTTTCTACAGTTTGTCCACTTTGAATATACATACTCGTACGCACACTGGAGAGCGTCCGTTTGATTGCGATTTATGTGAAAAGAAGTTTCCCTCCTTGGTAGCGTTGAAGAAGCATCGCCGTTATCATACCGGTGAAAAACCATACACGTGTACTGTGTGCAAACAATCATTTGCAGTGAAAGAAGTATTAAATCGTCATATGAAACGTCATACCGGTGAACGGCCATATGCGTGCAGTGAATGTGGCAAAAGTTTTATACAGGGTGTACAGCTGCGCAATCACATTAAAACACACGTTAGACCGTATGAATGTGATACATGTAACGGGAAATTCAAAACTGAAAAacaATTGCAACGACATGAGAAAGAACATATCAAACGGAGAGTGCGCTCTAAACGGACCAGCAAATGTAACACTTGTAAGGTCAGCTTTCGTACAGCAGATGAATATGCGAAACATATGGAAAAGGGTGTACATTTGACACCTCATCAAAGACTAAAAATCAAGAATCGTACTGATTGTGCGGTATGTAAAGATGATTTTAAGAcggtaaaaaatttacaatttcatatattgaAAGTACATCAAGAGGATCCGGAAAATTTTGTCAATGAAAATCCCTTCGATGATGTACAAACGGTCAGCATTTCCACACCGtcacataaaattattaaaattgaagaTTCCAAAGGTCAGCATTGCGTTGAAGTTATTACCGGTAATAGTGATGAGGAAATTATTGACACCAGTGTGACTGAATCTGGTAAAAAGATTTCGATAAAAGAAGACCACGAAGTACCAGAAAACGAAGATAATGATGTGGTGGTGCAAAAGTTTGTTTTAGATGAACAGCCCAgcacatcatcatcatcacacCATTCAGGTGATGCCTCCAATCGTGTGGTTATTCTGTCAAATGACACTTTTACAATTATACCGTTAGAATCGAATGGCGGCTTAATAGAGTCTATCACCACGAACACTTTGCCAACTACATCAGTTCGGAACGAAACGAAAGCAAAACAACGTAAATCATTGGCGGAAAGTTTGGCGGCAGCTATAGccgataatgatgatgaagtgATTACTTTGGTGggtgaagaagaagaagatgaactAAGCACTGAAGATTTGGTTTTGaaagaaaatgttaataaattacttGACATGTTGGTGGATAATTGTACACTGAAAAAATTCGGTTGGCCAAACGCTTCAGAGgaaaaaGTACTTTGCCAAGTGATTGAAAATTGTGGTCACGATTTGGGGAAAGATTCCAACAACTATAAGGACTTAGACTATGGCACCCGTACGCGTGAATATGTCAAATTGTTATTTACCGTTGTCATACATAACGATTCAATTAAAGAgctattaaataattatacaatCGATGAAGTGATTGAGTACGTGTTGGGtaacgatgatgatgatgataatggtgatgatgatgaagaggaAGAAAGCATGAAGATGGTAACATAA
- Protein Sequence
- MNNKEKEKAQIRSSGTKSDVKILNEEKITNSPLNFPIMTSVPLSPPKPITLSLAKPKTTAALKKQKKMDHYLMQTIKGEKNAEGDEELETIDFILTDTNEIENTAQTSVETSEELNLSDDNDEQYEAYTESGKTEEIVEHVCGKCYKTFRRLKGLKKHLDYCRFDSGYHLRKAEMLKNLEKIEKDAVIMENKDVCFCCGESYDTYHLGHINCPDCPKSFKTQMSYERHIFITHSELNDHPCSICNAKLRSANLLKLHEEQHRSRGKPYACKICGKDFTRSYHLHRHQKFSSCMANEHDSIKCKVCDKAFYRLDNLRQHLKQHLGNHVTKKSEYMCPICKNCFYSLSTLNIHTRTHTGERPFDCDLCEKKFPSLVALKKHRRYHTGEKPYTCTVCKQSFAVKEVLNRHMKRHTGERPYACSECGKSFIQGVQLRNHIKTHVRPYECDTCNGKFKTEKQLQRHEKEHIKRRVRSKRTSKCNTCKVSFRTADEYAKHMEKGVHLTPHQRLKIKNRTDCAVCKDDFKTVKNLQFHILKVHQEDPENFVNENPFDDVQTVSISTPSHKIIKIEDSKGQHCVEVITGNSDEEIIDTSVTESGKKISIKEDHEVPENEDNDVVVQKFVLDEQPSTSSSSHHSGDASNRVVILSNDTFTIIPLESNGGLIESITTNTLPTTSVRNETKAKQRKSLAESLAAAIADNDDEVITLVGEEEEDELSTEDLVLKENVNKLLDMLVDNCTLKKFGWPNASEEKVLCQVIENCGHDLGKDSNNYKDLDYGTRTREYVKLLFTVVIHNDSIKELLNNYTIDEVIEYVLGNDDDDDNGDDDEEEESMKMVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01115162;
- 90% Identity
- iTF_01115162; iTF_00384722;
- 80% Identity
- -