Othy005226.1
Basic Information
- Insect
- Ormyrus thymus
- Gene Symbol
- -
- Assembly
- GCA_035582935.1
- Location
- JAWWEM010000027.1:18904458-18909330[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.45 60 5.3 0.7 3 21 40 58 39 59 0.92 2 15 0.082 11 7.6 0.3 2 21 92 111 91 112 0.91 3 15 2.8 3.8e+02 2.8 2.9 1 20 140 159 140 164 0.86 4 15 0.52 70 5.1 0.3 1 23 194 219 194 219 0.88 5 15 1.6 2.2e+02 3.5 1.8 2 23 225 247 224 247 0.95 6 15 0.002 0.26 12.7 0.1 2 23 331 352 330 352 0.96 7 15 4e-05 0.0054 18.0 4.9 3 23 594 614 592 614 0.95 8 15 0.00036 0.048 15.1 5.7 1 23 620 643 620 643 0.97 9 15 0.00017 0.023 16.0 1.2 1 23 650 673 650 673 0.95 10 15 0.0071 0.95 11.0 4.6 1 23 679 701 679 701 0.97 11 15 0.064 8.6 8.0 1.0 2 19 707 724 707 729 0.92 12 15 0.00098 0.13 13.7 0.2 1 23 736 758 736 758 0.96 13 15 1.7e-07 2.3e-05 25.5 1.5 1 23 762 784 762 784 0.99 14 15 0.0011 0.14 13.6 4.8 1 23 790 812 790 812 0.98 15 15 0.00049 0.066 14.6 0.5 1 23 818 841 818 841 0.97
Sequence Information
- Coding Sequence
- ATGGAGATCGAAATGATGAAGTCGCTGCTGAAAGAGTACAATTGGTTCACGGAAAAGAGCAGGAAAATGGACGCGAGACTGATCCGCAAGCGAAAAAGGCGTAACAAAAACCCGTATTGCCGGCAGTGCCgtcgttattttaaaaactattccATTCTAGCAAGGCACAGACAAGTTTGCTCCTTACAGCAGATCGAGGAGACTGGCACGAAGGAAGAAGTAGAGGAAGCGCCAGGAGAGAGCAATGATAAATTTGAGCTCAGGCCTCTGATTACTTGCAAGGACTGCAAAGTTACGTTTGCCACGACGAAAGAGATCTTCGAGCACCGCCAGTATCTTGACTGTGCCGTTTCTTCGAAAGAGGAGGATTCAGATTTGTCTGATAACACCGACGAAGAGTACGAGTATGACATGCTGTACACCTGCAACTTCTGTCGAGCGAAATTTATCTCAGCGCAGCTACTTAAGTGCCATAAGACGAAGGAGGACCACTGGAAATCCGCGAGCCAAAGCGACTTAGTCGAGATAGAGAGGGACCTCGACGAGGACTTCACCTTTCGGAGCGTGGAGGAGAATAATTACTACTGCACGGCTTGCAATAACGGCGTGGTTTACTACGATTTAGACGACCTCTTAAAGCACCACCGAGTGGTGCACAATAACTCCGTCATCTACTGCCGCTATTGCTCGCAAAAGCTCAACAACATCGCGGAGTTTAACGATCACCACTATACTTACCACGAACTGCAGGATTACTGCAGGCTCTGCAACGATAAGGGCGATATCGTGCTCGAGCCAAACGAACTGCCGCCCAAACCTGTGTGCCTGAATTGCTGCCGAAAGTATCAGCTGCCGTTCGAAACCTGCCTGAGTGTGTTGAAGGAGAATTTGTATTGCGACGACTGCGAACGAGTGATGCCCTCCGTAGCGTACTTCCGCTTTCACAACTGCGTCAGAGAGGAATTTCGCGAGTTCTCTATGTCGATGCTCGTCTGTCCGTTGTGCTTGGAATCGTACAATAGTTTGAGATCGCTGTACAGACACATAATTAGGCATAGCGACATGCTGACGTTTGAAGAGGATAATAAGCAACAAGTTGCATGCGAAATTTCCAATTTGATaagccaaataaaaattgagaacGTTTTCACGTGCCAAGACCTCGTCGTCCCGAAGAACGAACCTGACGAAGACGACGTCAAACTTCTTCCATTCTACACTGTGTTCGTAAATTCGTGTACCAATAAAGAAAGTGCAATGGccgttttcaaaaaaaggaaTCCATTCCACGGCATGAAAAGGAAACGATATCAGAGGCTTAAAGATCCGCTAAGGCTGAGCGTTGAAGATAAAGAAAATGCAGGACTGCCGAAGATGCCTCGCCAGATCAAGCAAGAATTTGAAGCTCCACTTCCTCCTTTATTTTGTGAGATGCCCGTATTGAATAATAACTgggaaaatgtaaaaataaagcaagaaGACGAGGGCTCGAAGACgaACACTCCAATTCAACCAGTGCTTACAATAGTTGTAACTCTTGAACCAACAAACAAAGGCAGTGAAATTCAACACAGAATTGAATacatcgaaaattttaaattcaatgaacCACTGCAGGAAGAGCAGGTTGAAACTGAAACACCTAGCAATTGCAAAAAGGATAATTCGGAAGTTTCTGAAAAATCccaagaaaatgaaagaattttaaattcggaGAAAACAAATGCTGAAGACACTACTAGAACATACAAAGGCAGAACAAGAAATTACAGGCACCTCTGCGAAATTTGCGACACGCGTTTTTACAGAAGCGATCACCTGAAGAGCCACATGTCTCGCCACTATGAATCCCAGTCCTTCCAGTGCTCGATCTGCAGCCAATGCTTTAAATCCTCCGTGACGCTTTACCGTCACAAAAAGCGCCAGCACGGCAAATCCACTCCAACATTCACTTGCGACAAGTGTGATTTCAAAACAAGAAGCTCGGTTAATCTCAAGCGACACGTTGCCGTAAAGCACACCGACACTTACCTACACACCTGCAGCTTCTGCTCCAAGAAGTTCAAGATCAGAAACGAGTACAAAGCGCACTTGCGCGATCACAGGTCGGGTGAGCGGGTCTGCGAGGTATGCGGCAAAGTTTATCCCAGCTTGAGAGCTTTGTACTATCACAAGTTTTGCAAGCACATGGAGAAAGTGCGCAAATACGAGTGTGACGTTTGCAAGAAACGCATCGCGACTAAGCAGAACATGGAGAGGCACGTGGCACTACATCAGCAGAAATACGTCTGCGACAAATGCGGAAAAGAGTTGAAGAATAAAGATTATCTGACAAGGCACATGAAAACGCACAGGACCGAGAAATTATACATGTGTCAGTTTTGCGATAAGAGCTTTTCAAAACAAAGCTCGAAGCACATCCACCTGTTGAAGCACATCGGGGAACGCCCTTACGTATGCGATATTTGTGGTAACAGCTTTACCCAGAGAACGCCGATGATTCTTCATAGAAAAAAGCAGCATCCGGAGATCATCGAGCCGCCACCTCCACCAATCAAGATCATCAAACTGCTTCAGCGAGTGAAGGAGCAAGCTGCTGAAAGTGACAAATAA
- Protein Sequence
- MEIEMMKSLLKEYNWFTEKSRKMDARLIRKRKRRNKNPYCRQCRRYFKNYSILARHRQVCSLQQIEETGTKEEVEEAPGESNDKFELRPLITCKDCKVTFATTKEIFEHRQYLDCAVSSKEEDSDLSDNTDEEYEYDMLYTCNFCRAKFISAQLLKCHKTKEDHWKSASQSDLVEIERDLDEDFTFRSVEENNYYCTACNNGVVYYDLDDLLKHHRVVHNNSVIYCRYCSQKLNNIAEFNDHHYTYHELQDYCRLCNDKGDIVLEPNELPPKPVCLNCCRKYQLPFETCLSVLKENLYCDDCERVMPSVAYFRFHNCVREEFREFSMSMLVCPLCLESYNSLRSLYRHIIRHSDMLTFEEDNKQQVACEISNLISQIKIENVFTCQDLVVPKNEPDEDDVKLLPFYTVFVNSCTNKESAMAVFKKRNPFHGMKRKRYQRLKDPLRLSVEDKENAGLPKMPRQIKQEFEAPLPPLFCEMPVLNNNWENVKIKQEDEGSKTNTPIQPVLTIVVTLEPTNKGSEIQHRIEYIENFKFNEPLQEEQVETETPSNCKKDNSEVSEKSQENERILNSEKTNAEDTTRTYKGRTRNYRHLCEICDTRFYRSDHLKSHMSRHYESQSFQCSICSQCFKSSVTLYRHKKRQHGKSTPTFTCDKCDFKTRSSVNLKRHVAVKHTDTYLHTCSFCSKKFKIRNEYKAHLRDHRSGERVCEVCGKVYPSLRALYYHKFCKHMEKVRKYECDVCKKRIATKQNMERHVALHQQKYVCDKCGKELKNKDYLTRHMKTHRTEKLYMCQFCDKSFSKQSSKHIHLLKHIGERPYVCDICGNSFTQRTPMILHRKKQHPEIIEPPPPPIKIIKLLQRVKEQAAESDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01111265;
- 90% Identity
- iTF_01110432;
- 80% Identity
- -