Oros006543.1
Basic Information
- Insect
- Ormyrus rosae
- Gene Symbol
- -
- Assembly
- GCA_035047165.1
- Location
- JAWWML010000032.1:10168280-10170700[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.015 1.8 10.0 3.5 1 23 84 107 84 107 0.97 2 16 0.14 16 7.0 0.4 1 23 143 166 143 166 0.89 3 16 0.17 20 6.7 4.1 2 23 244 266 244 266 0.96 4 16 0.16 19 6.8 4.7 2 23 293 315 292 315 0.95 5 16 9.3 1.1e+03 1.2 0.2 2 21 364 383 363 386 0.64 6 16 1.3 1.5e+02 4.0 1.7 1 23 404 427 404 427 0.96 7 16 0.12 15 7.2 4.0 1 23 442 465 442 465 0.95 8 16 0.74 87 4.7 0.9 1 23 475 498 475 498 0.94 9 16 0.0092 1.1 10.7 1.3 1 23 549 572 549 572 0.97 10 16 0.055 6.4 8.3 1.8 1 23 590 613 590 613 0.95 11 16 5.7e-06 0.00067 20.8 1.3 1 23 619 642 619 642 0.95 12 16 0.00045 0.053 14.8 1.2 3 23 649 670 647 670 0.93 13 16 0.0015 0.17 13.2 0.3 1 23 675 698 675 698 0.97 14 16 3.5e-07 4.1e-05 24.6 0.3 2 23 705 726 704 726 0.97 15 16 3e-05 0.0035 18.5 0.4 1 23 732 754 732 754 0.98 16 16 2.8e-07 3.3e-05 24.9 0.6 1 23 760 782 760 782 0.98
Sequence Information
- Coding Sequence
- ATGAGGGGCCGACGCCTAGTTTTCCAGAAAAAGCTCGTCAAAATCAAGCCTTGGGAACGCTTCGAAAATGTACAGTCTCGCACTACCGCTCCTTCAGCTCCGATagtcgaaataaaaatcgaacAACCTGATCTTGGCGTCACCGATTTCGAAGAGGTATCGATCGACGGTACAGAAACTTCCAAACCTGAAACCTCAATTCCTGTTGTCGTCAAGCCACCCAAAAAGAGAATTGAGgatttaattgtatatatgTGCAATGCCTGCAAGGTATATTTTCCAATGAAGAGCTCATTGGAACATCATCACAAAACTGTGCACGGTAACGTGGGCAGTGAGAAAGTGACTCGTTTGAAGTCAAATAAAGAGGAGAAAGGaccagaaaatattttctatgcgGAATATCATAAAGCCAAAAACGGCCAGTATGTTTGTAACTACTGTCCTTTCACGTCTTTCGTTCAGTCAAACGTAGTATCACATGCAGTTCGTAAGCACGGTACTGTACTAGAACTGCAGCCTGACAACACAATTCAAATAGGAGTGGGtcagaaaattgaagaaacCTTAATAGAAGATACCCTTATGGACGTTGACCCTTTACCTAAGACTGAAATATCTGACGAAGATGACGAAGATTCGTGGCCTATAGACGTGGTTGAGGAAGAATTCCACGAGGAAGTACAAAAGATCGACGAGGAGGCTGAGAAATCCACGGAAAAAGTGCGTAGCTGTCCTTATTGTTCTTTCGAGACAACAAAAAGCTCAACCTTCCATTCGCACGTAAAGCGTAAGCATTACGAAAACTGGGCCAAGTCTATAGAAGAAAAAGTCACAACTTTAGCTAATACGAGAAATGTCTACACGACGGAAAAACAGTGTCGCTACTGCAACTACAGAACTTTCAATCGTTCGACGCTGCATTCTCACGTCATACGTAAGCATCCGCAGCATAAGGGCGAAACCGAGGATTCATTCGTAGAGATCAAGGAAGAAGATTTAATCGAGCTTGTCCAGGATAGAAGCGCAGAGGTAGACGCTATGTCGCCCTGTAAGGAAGAAGCTCCAGATCAAAATCGCAAAGCTATGAAGTGCCCCTATTGTCCTTTCGAGTCGTGGATTTTATCGACGATGCAATCGCATATAACTCGCCGCCACAGAGGAATGCCCACCGCCAAAAAGCAACCATCGGCGCAGCTTTACACTGGTTATGCCTGTCACTTTTGCACTTTCGTGGCGGCAACAGTAGCCAGTTTCCATGCGCACACAAATAGAGAGCACTCGGGGCAAAAACAGCCTATCAAAGAAGTACCTGTAACCGAATACGACTGCGACCAGTGCGACTTCAAATCGCGCAACCGTCGTAACATGCAGCTGCACGTGAAACAGTGCCACACGACCCAAGCCAACGAGGAAGGTATGTTTGCTTGTCATGCTTGCTCTTACGAGACGATGTCGcgaatgggcctacagaggcATGTGTCGATCAAGCATAACAAGCCGAGAAGAGAAGCTATGGCCAAAACCAAAAACGTTTTCTACAGTTGCGAGGAGTGTGAATTCAAATGCTTGAATAAGAAGATGATGGACTGGCATAAGAGGCAGCATAGCGCTCCGCCCAATGCTGAAGACAACGGAAACACATATTTCTGTAATGATTGTGACTTTTCGACGTGGACAAAAGGACAACTGTACCTTCATATAAGGAGGAAACACAAGGATTCGGATGGTAAAGATAAGGAACTAGAACCGGAAACGGAGACAATATTTGCATGTGATCAGTGCGATTACACGAGCAAAAATAAGCACGTGATGAAAGTGCATGTGATAAGAAAGCACACAAATGACTACAACCACGAGTGCGAGATCTGCGGtaagaaatataaagttaaagCTGATCTGACAAATCATATCAGGTTCCAACACAGAGAACAGCCAATAAtttgcgatgtttgcggtaaaactTGTAGAAACAGTAACTTATTATATTTGCATCAGAAGTTTGCTCATTACAAGCCAGAATTCGAATGCCCAATATGTCACAGAAGAATGGTCAGTCAGGCCAATCTTGATGATCATATTATTAAGCAGCACGAGCAAAGAGAAGATGTTGTGTGCGAAGAATGTGGAAAAACGTTTACTAAACAAGCGAGACTCAAAATCCACATGAGGATTCACACAGGTGTTAAGCCTTATACTTGCAAAGTATGTCTTAAGGCCTTTGCTAGGCGCAATGGATTAAGGCAGCATTTGCTAATTCACACTGGACAGAGGCCCTACATTTGCGATATTTGCGGCAAGTCATTTACTCAGAAGACTGGTTTAATTAGCCACAGAAAGAGTCATCCTGGCTCCCATCCGCCGCTGCCGAGAGTTACAATAGACCATGTACTCTCCGATCTATTGAACGAAGAGAGTTGA
- Protein Sequence
- MRGRRLVFQKKLVKIKPWERFENVQSRTTAPSAPIVEIKIEQPDLGVTDFEEVSIDGTETSKPETSIPVVVKPPKKRIEDLIVYMCNACKVYFPMKSSLEHHHKTVHGNVGSEKVTRLKSNKEEKGPENIFYAEYHKAKNGQYVCNYCPFTSFVQSNVVSHAVRKHGTVLELQPDNTIQIGVGQKIEETLIEDTLMDVDPLPKTEISDEDDEDSWPIDVVEEEFHEEVQKIDEEAEKSTEKVRSCPYCSFETTKSSTFHSHVKRKHYENWAKSIEEKVTTLANTRNVYTTEKQCRYCNYRTFNRSTLHSHVIRKHPQHKGETEDSFVEIKEEDLIELVQDRSAEVDAMSPCKEEAPDQNRKAMKCPYCPFESWILSTMQSHITRRHRGMPTAKKQPSAQLYTGYACHFCTFVAATVASFHAHTNREHSGQKQPIKEVPVTEYDCDQCDFKSRNRRNMQLHVKQCHTTQANEEGMFACHACSYETMSRMGLQRHVSIKHNKPRREAMAKTKNVFYSCEECEFKCLNKKMMDWHKRQHSAPPNAEDNGNTYFCNDCDFSTWTKGQLYLHIRRKHKDSDGKDKELEPETETIFACDQCDYTSKNKHVMKVHVIRKHTNDYNHECEICGKKYKVKADLTNHIRFQHREQPIICDVCGKTCRNSNLLYLHQKFAHYKPEFECPICHRRMVSQANLDDHIIKQHEQREDVVCEECGKTFTKQARLKIHMRIHTGVKPYTCKVCLKAFARRNGLRQHLLIHTGQRPYICDICGKSFTQKTGLISHRKSHPGSHPPLPRVTIDHVLSDLLNEES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01111233;
- 90% Identity
- iTF_01110406;
- 80% Identity
- -