Basic Information

Insect: Ormyrus rosae
Gene Symbol: Prdm15
Assembly: GCA_035047165.1
Location: JAWWML010000062.1:9420401-9423038[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.00018 0.021 16.1 3.1 2 23 406 428 405 428 0.95

2 7 5.1e-07 6e-05 24.1 0.8 1 23 439 461 439 461 0.98

3 7 7.3e-07 8.6e-05 23.6 2.4 1 23 467 489 467 489 0.99

4 7 0.00015 0.018 16.3 0.5 3 23 498 518 496 518 0.92

5 7 0.0003 0.035 15.4 5.0 1 23 526 548 526 548 0.97

6 7 2e-07 2.3e-05 25.4 0.3 1 23 554 576 554 576 0.97

7 7 4.7e-06 0.00055 21.1 0.6 2 23 587 609 586 609 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.00018	0.021	16.1	3.1	2	23	406	428	405	428	0.95
2	7	5.1e-07	6e-05	24.1	0.8	1	23	439	461	439	461	0.98
3	7	7.3e-07	8.6e-05	23.6	2.4	1	23	467	489	467	489	0.99
4	7	0.00015	0.018	16.3	0.5	3	23	498	518	496	518	0.92
5	7	0.0003	0.035	15.4	5.0	1	23	526	548	526	548	0.97
6	7	2e-07	2.3e-05	25.4	0.3	1	23	554	576	554	576	0.97
7	7	4.7e-06	0.00055	21.1	0.6	2	23	587	609	586	609	0.95

Sequence Information

Coding Sequence: ATGGATGTAGATACAAATGTTAGACAAATATTAGAAGAAGCTGATGAAGGACAAGAAATCATTTTGGAAACTGAAGAAGGATGTGAAGAGGGTGAAGTTGAAGAAATTGTAGAAATCATTGAAGAAATAGAAGAAGTTATAGATGAAAATGAAGCAGAACCAGTTGAAGAAGTTGAAGAAGttgaacaagaaataaaagaagtagaagaagaatttataaacagtaaaagtgtacaaaaatctaatattataaatgtacgGAAAAGTGGGAATTCTATTGAAAAgTCTCCACAGACTTCTGCCAAAAAAGTAAGGATAAATAGTCAGGTCCACTATGATGCATCTGCAGATTGGGAGGATGAAGAGTATGAACAAGAACATAATAATGGAATAGAACACACAGAAGAATCTATAGCAACTACGGAAGAATCAAACCATTATGAAACATATGATAATGGAGTAAATGATGAAGTAATTCaagaagagagagacgaaACTAGAACCCCACTGCACTATGAACAAAATGATAATCATGAAAATAGTGTAGAAGAAGATGATAGTCAGCcagaaattattcaaaattctgaaaataatttagtgtACGCAGTGCTAGGTTCTAAAAAACAAGTTCAATCTACTCAAGAAATTCAGTCAGATATGGAATTTGTAGAAGTACAAAGGTATAATGATGATAATTTACCAGAAGAAGGGACAATTTATTATGCAGTAAATGATGGAGATGGAACTTATGTTCAAGCAATTGAACAAAATGAGCAACAATATCAATATATTGCTGAAGAGCCAATGGAGCAAGATAATCAAGAATGGGAGACAGCTAATGAAAACGTTGAGAATCAGGAAGAACAGGCTGAGCAGgaacaaattttcttacatGAAGATGAAGATGGAcaattgtatttcaaaaatgaacaTGGACAATTACAACCAGTTTATCTTACTCCTGATGGTAATTATGCTATAGCAGAAAATAGTAGTGATGAACAAGAAAGTCAAGAAGATGTGAATCAAATGCAAGAAGAACAAGCAGAATCTGAGAACTATGTACTTCCCgatttagatttaaaacacattaattcgaaaaagTCTCAGGATGTTGATAATGATGATAGTACAGTAACAATTTCTCTAATAATATCCGAGGATGAAAATGGTCAAAAGCGAACTCAAGTTATAATACCAACTCCTGCTgaatcaaaatgtaatttgtgtaacaaaactttcaaaacttCTTTACAATTACTTAAACATAATCGATTAAAACATGCTAGGGAAGAAGATATTACTACTAGAAATTTTCCTTGTGATTTATGTCCTAAAAGATTTACTGACCAGAATTCCTTGGCTCGTCATCGAAAAACTCATTCTGAAGGACGACAGTACCAATGTTTGGAATGTCACAAAACTTTCCCTTCACCTAATACACTTCGAAAACATTTAATGACCCATAATTCCGATTCGCACCCGTTACCTTGCATTTATTGTGGGCGACGATTTTCGGATAGAACTAGTCTTATGAAACATGAACAATCACATTTAGCTGGTGAGAAGAGGACACATTCTTGTGATATGTGTCAAAAGTGTTTTTCTAATGCTACTGACTTAAGTATTCATAAGAAAAACCATGATCCAGATAGAAAATTTGATTGTGAGGTTTGTGGTCGTGAGTTCAACCgactaaataatttacagcGTCATATGATGGTTCATCAACAGcaagGAGAAAgtgaagaaattttatcttgTAACGTTTGTGGAATTACgtacaaattttcaagttcTTTGACCAGACACATGGTCACGACGCACATGAATCCCGAAAAGCTTCGACAACAAGCAGAGGAACAGAGAAAGAAGCGTGAGCATCACTATCGTCGTTAccttgaaaatcgaaaaacctATGAAACTCAACAACCAAAACGTACTTATCGGCGTTCTAGTAGGTTAATCGACGATCAAGATGATGATATTGATTga
Protein Sequence: MDVDTNVRQILEEADEGQEIILETEEGCEEGEVEEIVEIIEEIEEVIDENEAEPVEEVEEVEQEIKEVEEEFINSKSVQKSNIINVRKSGNSIEKSPQTSAKKVRINSQVHYDASADWEDEEYEQEHNNGIEHTEESIATTEESNHYETYDNGVNDEVIQEERDETRTPLHYEQNDNHENSVEEDDSQPEIIQNSENNLVYAVLGSKKQVQSTQEIQSDMEFVEVQRYNDDNLPEEGTIYYAVNDGDGTYVQAIEQNEQQYQYIAEEPMEQDNQEWETANENVENQEEQAEQEQIFLHEDEDGQLYFKNEHGQLQPVYLTPDGNYAIAENSSDEQESQEDVNQMQEEQAESENYVLPDLDLKHINSKKSQDVDNDDSTVTISLIISEDENGQKRTQVIIPTPAESKCNLCNKTFKTSLQLLKHNRLKHAREEDITTRNFPCDLCPKRFTDQNSLARHRKTHSEGRQYQCLECHKTFPSPNTLRKHLMTHNSDSHPLPCIYCGRRFSDRTSLMKHEQSHLAGEKRTHSCDMCQKCFSNATDLSIHKKNHDPDRKFDCEVCGREFNRLNNLQRHMMVHQQQGESEEILSCNVCGITYKFSSSLTRHMVTTHMNPEKLRQQAEEQRKKREHHYRRYLENRKTYETQQPKRTYRRSSRLIDDQDDDID

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01111226;
90% Identity: iTF_01111226;
80% Identity: -