Oros012839.1
Basic Information
- Insect
- Ormyrus rosae
- Gene Symbol
- -
- Assembly
- GCA_035047165.1
- Location
- JAWWML010002059.1:409-1698[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00015 0.018 16.3 0.2 1 23 14 37 14 37 0.96 2 13 0.00042 0.049 14.9 0.2 1 19 42 60 42 61 0.95 3 13 0.67 78 4.9 0.0 5 15 74 84 73 86 0.87 4 13 1.6 1.9e+02 3.7 0.0 6 16 103 113 102 115 0.90 5 13 4.7e-06 0.00056 21.1 0.6 1 23 156 179 156 179 0.97 6 13 5.2e-06 0.00061 20.9 0.4 1 23 184 207 184 207 0.94 7 13 4.2e-05 0.0049 18.1 0.6 1 23 212 235 212 235 0.96 8 13 4e-05 0.0047 18.1 0.2 1 23 251 274 251 274 0.95 9 13 0.00012 0.014 16.7 1.0 1 23 279 302 279 302 0.96 10 13 4.7e-05 0.0056 17.9 1.8 1 23 307 330 307 330 0.96 11 13 0.0065 0.77 11.2 1.5 1 23 335 358 335 358 0.92 12 13 5e-06 0.00059 21.0 1.5 1 23 363 386 363 386 0.97 13 13 0.15 18 6.9 2.1 1 17 391 407 391 414 0.82
Sequence Information
- Coding Sequence
- ATGGCCAATCGCAAATTGAAAGCGCACGAGAATCTAAAGTTTGATTGCGACGTCTGCGGCGTAAGCTTTGatcaaaatagaaatatgCTCGCTCACAAGCAATCTGACCATGAAGGATTTACATTTGTTTGTGACGTCTGCGGCAAGGACtttactcaaaaaattactatgcgCATTCACAAGTGGCATTCGCACGGCGGAATAAAATTTGACGGAGACGTCTGCGACAAGGGCTTTACTAGTAAAAGTGATATGCTCCCTTACAAACAGACTGTTCACAAAGGAATAAAACTTGACGACGACGCCTGCGACAAGGGCTTTACTAGTAAAAGTGATATGCTCACCTACAAGCAATTTGTCCacgaagtaattaaatttgacgGTGACATCTCCGACAACGGTTTTTCCGCAAAGCATCCTTGTTCCTTGATCGATTACAAACCAGCTGCCCAtgaaagaattcaattttattgcgaCGTTTGCGGCAAGGGCTTTACTCAAAAGCAGAATATGATCATTCACAAGAAATCTGTCCACgaaggaataaaatttgactGCGACGTCTGCGGTAAGGGCTTTACTCAAAAGCAGAATATGATCAGGCATAAGGAATCTGCCCACGAAGGTATAAGATTTAACTGCGACGTCTGCGGCAAGGGCTTTACTCAAAAAAATACTATGCTCATACACAAGAAATCTGCCCACGAAGGAAATAACAATCGCAAATTGAAAGCGCAAGAGAATGTAAAGTTTGATTGTGTCGTCTGCGGTAAGGGTTTTGCTAAAAAGGCAAATATGATCAGGCACAAGCAATCTGCCCACgaaggaaataaatttcattgcgACGTCTGCGGTAAGGGCTTTACTCGAAAGCAGAGGATGATCGTGCACGTGCAATCTGTCCACGAAGGAATAAGATTTAACTGCGACGTCTGCGGCAAGGGCTTTACTCAAAAACATACTATGCTCATACACAAGAAATCTGCCCACGAAGGAAATACATTTCACTGCGGCGTCTGCGGCAAgggatttatttataaaacgtcACTGGCCTTTCACAAGAAATCTGCCCACGAAGGAAATATATTTCACTGCGACATCTGCGACAAGGgctttatatataaaagttctATGAGAGCTCACCAAAAATCTGCCcacgaaagaaataaatttcactgcGACGTATGTGGTATTggctttacaaaaaaaaataatgttttctttcACAAGCAATTTGCCCATGAAGGAATTATATCTGTTGACGACGACTGCGGTAAGAGCTGTTCGTGA
- Protein Sequence
- MANRKLKAHENLKFDCDVCGVSFDQNRNMLAHKQSDHEGFTFVCDVCGKDFTQKITMRIHKWHSHGGIKFDGDVCDKGFTSKSDMLPYKQTVHKGIKLDDDACDKGFTSKSDMLTYKQFVHEVIKFDGDISDNGFSAKHPCSLIDYKPAAHERIQFYCDVCGKGFTQKQNMIIHKKSVHEGIKFDCDVCGKGFTQKQNMIRHKESAHEGIRFNCDVCGKGFTQKNTMLIHKKSAHEGNNNRKLKAQENVKFDCVVCGKGFAKKANMIRHKQSAHEGNKFHCDVCGKGFTRKQRMIVHVQSVHEGIRFNCDVCGKGFTQKHTMLIHKKSAHEGNTFHCGVCGKGFIYKTSLAFHKKSAHEGNIFHCDICDKGFIYKSSMRAHQKSAHERNKFHCDVCGIGFTKKNNVFFHKQFAHEGIISVDDDCGKSCS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01110383;
- 90% Identity
- iTF_01110383;
- 80% Identity
- -