Oros013856.1
Basic Information
- Insect
- Ormyrus rosae
- Gene Symbol
- -
- Assembly
- GCA_035047165.1
- Location
- JAWWML010003763.1:15332-16543[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.015 1.8 10.0 0.2 1 23 56 79 56 79 0.90 2 12 0.006 0.7 11.3 0.3 1 20 84 103 84 103 0.93 3 12 0.29 34 6.0 0.0 5 20 116 131 114 133 0.84 4 12 2.4e-05 0.0029 18.8 1.4 1 23 140 163 140 163 0.95 5 12 1e-05 0.0012 20.0 2.3 1 23 168 191 168 191 0.90 6 12 4.3e-06 0.0005 21.2 1.8 1 23 196 219 196 219 0.95 7 12 5.6e-06 0.00065 20.8 0.5 1 23 224 247 224 247 0.96 8 12 1.4e-06 0.00016 22.8 1.8 2 23 253 275 252 275 0.96 9 12 2.6e-06 0.0003 21.9 0.9 1 23 280 303 280 303 0.95 10 12 4e-06 0.00047 21.3 2.9 3 23 310 331 308 331 0.96 11 12 0.052 6.1 8.3 0.0 5 21 340 356 339 357 0.90 12 12 0.0013 0.15 13.4 1.2 1 20 364 383 364 387 0.92
Sequence Information
- Coding Sequence
- ATGGCCTGTCACGAATTGCAAGCGCTCACGTCTGCGGCAACAGCTTATctaactgaaaataaaatggccTATCATGAATTGCAAGCGCTCACGTTTGCGGCAACAGCTTATccaactgaaaataaaatggccTATTACGAATTGCAAGCGCTCGAGGGTAGAAAATTTGATTGCGACGTCTGCGGCGAGAGCTTCAATGAAAATAGGGTTATGGTCGATCACAAGCGATTTCTCCACGAAGGATTTACATTTAACTGCGACTTCTGCGGCAAGGACTTTACTGAAAAAACTGATATGGTCATTCACAGGTGGCATGCGCACTGTCGAATAAATGTTGTCCGTGACGTCTGCGGCAAGAGCTTTTCTCCAAAGCAGTCTGCGCTCGTTCACAAGCAATCTGCCCAAGAAGGAATGACATTTAACTGTGACGTCTGCGGCAAGAGCtttgctaaaaaatataatatgctCAGTCACAAAAGTTCCACGCAtggtggaaaaaaatttaactgtgACGTCTGCGGCAAGAGCTTtactacaaaatataatatgctCAATCACAAAAGTTTCACACAtggtggaaaaaaatttaactgtgACGTCTGCGGCAAGAGCTTTactaacaaatataatatgcTCAGTCACAAAAGTTCCACGCAtggtggaaaaaaatttaactgtgACGTCTGCGGCAAGGGGTTTACTCAAAAGGCTCAAATGAATATTCACAAGAAATCTATCCACGAAGGAATTAGAGTTGAATGCGACGTCTGCGGTAAGAGCTTTTCTCATAGAAAGAACATGATCAAACACAAACAAACTGTCCACGAAGGCATTAGATTTGAATGCGACGTCTGCGGTAAGAGCTTTTCCGATAGAAAGAACATGATCATTCACAAGCAATATTTCCACGAAGGAATTGCAATTGACTGTGACGTCTGCGGTAAGAGCTTTTCTCGTAGAAAGCACATGATCAAACACAAGCAAACTTTCCACGAAGGAATTACAGTTGACAGCGACGTCTGCGACAAGGGATTTACTCAAAATAAGTCCGTGATTGCTCACAAGCAATCTTTTTACGAAGGAATTAGATTTGACTGCGACGTATGCGGCAAGAGGTTTATTCAAAAGAGAGCCATGATTATGCACAAGCAATGCGTCCACAAAGGAATTAAATTTGACTACGACGCTTGCGGCAAGAGCATAAGTACATAA
- Protein Sequence
- MACHELQALTSAATAYLTENKMAYHELQALTFAATAYPTENKMAYYELQALEGRKFDCDVCGESFNENRVMVDHKRFLHEGFTFNCDFCGKDFTEKTDMVIHRWHAHCRINVVRDVCGKSFSPKQSALVHKQSAQEGMTFNCDVCGKSFAKKYNMLSHKSSTHGGKKFNCDVCGKSFTTKYNMLNHKSFTHGGKKFNCDVCGKSFTNKYNMLSHKSSTHGGKKFNCDVCGKGFTQKAQMNIHKKSIHEGIRVECDVCGKSFSHRKNMIKHKQTVHEGIRFECDVCGKSFSDRKNMIIHKQYFHEGIAIDCDVCGKSFSRRKHMIKHKQTFHEGITVDSDVCDKGFTQNKSVIAHKQSFYEGIRFDCDVCGKRFIQKRAMIMHKQCVHKGIKFDYDACGKSIST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01110374;
- 90% Identity
- iTF_01110374;
- 80% Identity
- -