Oros006544.1
Basic Information
- Insect
- Ormyrus rosae
- Gene Symbol
- -
- Assembly
- GCA_035047165.1
- Location
- JAWWML010000032.1:10171613-10178098[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0093 1.1 10.7 2.9 1 23 90 113 90 113 0.97 2 19 0.12 14 7.2 3.5 1 23 394 417 394 417 0.97 3 19 0.00025 0.029 15.6 1.1 1 23 449 472 449 472 0.96 4 19 0.69 81 4.8 1.1 1 23 487 510 487 510 0.96 5 19 1.3e-05 0.0015 19.7 3.2 1 23 516 539 516 539 0.96 6 19 0.0011 0.13 13.6 4.1 2 23 545 567 544 567 0.96 7 19 0.0053 0.62 11.5 0.4 1 23 572 595 572 595 0.97 8 19 6e-06 0.00071 20.7 0.6 1 23 601 623 601 623 0.98 9 19 0.00018 0.021 16.1 1.6 1 23 629 651 629 651 0.96 10 19 5.4e-05 0.0063 17.7 1.8 1 23 657 679 657 679 0.98 11 19 1.4 1.6e+02 3.8 0.3 2 23 927 949 926 949 0.90 12 19 0.061 7.2 8.1 0.8 1 23 961 984 961 984 0.96 13 19 0.081 9.6 7.7 3.5 1 23 999 1022 999 1022 0.93 14 19 0.00029 0.034 15.4 5.8 1 23 1028 1050 1028 1051 0.95 15 19 0.47 55 5.3 1.1 3 23 1058 1079 1056 1079 0.94 16 19 0.0028 0.33 12.3 0.4 1 23 1084 1107 1084 1107 0.96 17 19 6.5e-07 7.6e-05 23.8 0.4 2 23 1114 1135 1113 1135 0.96 18 19 2.1e-06 0.00024 22.2 0.4 1 23 1141 1163 1141 1163 0.97 19 19 7.1e-05 0.0084 17.4 1.0 1 23 1169 1191 1169 1191 0.98
Sequence Information
- Coding Sequence
- ATGGGACAACTCAAAAGATTTGGatcAGTGACAATAAAGGACAGAAACGGCAAGCTCATTCGAATTCACTGCAGACAAGTGATCGACGACGAAGGCAACCTGTTCGAAGCAATAGTTCCTCCCTCAAGCATAATTCCAAAGAGCGAGTCGGAGCAGGACTTTCAAGGCGACGATGATGACTTCGAGGAGGTAACGATCGACGGGGTCAGTCCCTCTGTTGCTGCAACGCCTATCATTCCTGAATCGCGGCCTAAGAACTCGACTGTTTTCATGTGCAAATCGTGCAAGATTTTCTTCCCGGTGAGGCACATGCTAGAGAAGCATACGAAGACTGTACACAAAATCAGCTCGCCGAGCGTAACCAAGAAGCGCAAGCCAAGCTTCCTTGAGCGGATGAAAGAGAAAGCCGCTGGTTATCACAAAATACAATACAGTAATAAGTATGGATGCAATTACTGTCTTTTCTTGACATTTGATAAAAGTGTGATGGAAAGGCACGTTAAAAGAAGGCACTCTGATAAAAAACAATCAGTGGCGGTGAAAACTCCTTCTGTTGTGGTAGTTATTGAAAGCGCTaatgaaatcaataatataCAAGAAGAAGAGTTTGAGGAAATGAAGCTTGAGCCAGAAGTGACGGTTGTAAAGCAGTCGATTAGAAACGAGACAGATTTAGTAGAAGGCGACATGGAAATGATTGAAGCAGAAGGAATCATCGGTGAGGTTCTCGATGATGAAAGCATGAACATAGAAGAAGTAAATGTTGAAGATCCAATTTCGATTGAAAGTGAAGTGTTTCAAATAGATAACGAGGAACAAATTTCAgcggaaaatttagaaattattgaaaacaatcGCCTACTTCAAGTTGAAAACGAACAACTTATTCAGGACGTAAATGAAGAACTAGTTCAACACGAAGTATTTGTGCAAAACGAGGAACTAGTTCAAGCGGAAGATATAGAATTTCTTCATGTTGACTGCGAAGAAGTAATCGAAGCAGATAACGAAGTACTGATTCAAGCAGACAACGAAGTTCTGATTCAAACAGAAAACGAAAACTTTGCAGCAGAAAGTCAAGACCTCGTTGATGAACAAAACATACTTACAGAACAGTTTGGAGAAGAACTCAGTTCAGATGTATGGACAGAGGAGGATGGAACAAAAAAAGGTGAGCTGTACACTTGTCCGTACTGCAACTACGACGGGAATACTCGTACAGCGGTGCATAATCATATCCAAAAATGCCACTACGATGAGTGGATCGCCGCAATCGCTCGAAAGGATCGACGAAGAAAACCTTACAAAAAGCCAGAGTTTCAATACGGACCGAAGGTTCGCTCGTTCCCTTGCGAATACTGTGATTATGCGGCGACGAACCGGCCGAATCTCAATTCGCACATGAAACACAAACACCCAGAAATTGAGCGGGAGCCACGCCCCAAGCAGACTACGGAGTTTCAGTGCGATCTATGCGAGTTCAAGACGACGGAGCGacgcaaaattcaaattcacaTAGAAAGGAAGCACGTTACCGAGAGCCGATATCCCTGCGAGTACTGTggtaaaaaattcaaggttAAGTGTGACCTGACGTCTCACATCCGTTTCCAGCACTTGAGGGTTCCGTGCGTGTGCGACGTGTGCGGCAAGATTTGCACTAACAGCAACGCCCTGCACGTACACCAGAAGCGTGAGCACTACAAGCCCGAGTTCGAGTGTCAGATCTGCAAGAGAAGGATGGTTTCGCAGGAGAATCTGGACGAGCACATTCAGAGGCAGCACGAGCAGAGAATCAAGTACATGTGCGAGCAGTGCGgtaaggttttcgaccaaccCAATAAGCTCAAACAGCATTCTATGACGCATACGGGCGAGCGACCGCATATCTGCCACCTGTGTGGAAAGGCTTTTGCCAGAAGAGCCGTATTTAGGCAACACTTGTTAATTCATACGGGTCAGAAACCATATACGTGTGATATTTGTGGAAAGAGTTTTACACAGAAGCCGGGACTGATCTGTCACAGAAAGATGCACCCAGGTGAAAAGCCTCCTTTGCCTGTCGTTTATATTGATCATATCCTTGATAAGTCAGAGAAGAAGTCAGCGAACCGAGCCATCTTCCTCTTCGGGCGAGAAGCGCTGGTGATGCGCAAGTGGCAAATTCTGGAGTTCGACGGCAACCCCTACTACGCCTTCGTGCCCGAGGACGACGAACCGATCAAGGAGGAAGCGATTCCCGAGCTCCAGGAGGAGTCCGCCGCTCTCGAGCAAGAGCTAAATGTCAGTCAAGAGAGCGAAGATAGGAAGGAGGAGGATGAGCAGGATGATAAAGCCGATAATCGCTCGGTAGACGAAGAGACGGTCCCTGAAGAGTACATCGAAAGGCTCGAGGAAGAAATCGAGGAGCAAGATATCAAGCCTGTTATTATCAATGGAAATCTGCAAGCTCCGGAAAGCCAAGaagccgaggaggaggaggaagagcaAATCGACAATTCCCAAGCAGAGGTGTACCAGGTAAAGGTCGAGGGCGGCGTGGTCATGCTCGAGAAGCTCAATGTCGAGGCTATAGAAACGACAGACCAAGATGAAAATCATACTGTCGTGCTCGCAGAAAGCGGGGATCATCCAGACGAAGAATCCCAGGACGTTCTAGGCTTCGAGCaagaagacgacgacgaggtCGTAGCTACCATCGAGGAGGACGTCGTCGAGCCCGAAGAGACCGAAGAATTCCGGGGTACCACCTCCAAAACTGGCAGCGGCGGATCCCTCAAATGCAGGGCCTGCTCAGAGACGTTCGAGTCGACGCTGGCCTTCCGCAAGCACGTGGCTTGGACACACAAGAAGAAGGTGTGCATCGTAGAGGACGGTGCCTACATCTGCTCGGTGTGCGACTACCGGACGTTAAAGAAGAGCCAGTTTGCGGCCCATCTACAGCGACAGCACGAGACGTGGCAGCGTAAGCGACAGAGCTCCTCCTCGGCGATGTTCCCCTGTGCCGCCTGTGGCTTCGTCTGCCGTTCTAAGCACTCTCTCCAGTCGCACTTTATCCGCAAGCACACGGACCGCTACGAACACCAGTGCAAGTTCTGCCCCAAGAAGTTTAAAGTCAAGGGCGACCTCACGAATCACGTGCGCTTCCATCACAAGGAAAAGCCTGTGCACTGCGACGTCTGCGGAAAACTCTGCTTGAACAGCGGCTCGCTCTACGTACACCAGAAGTGGGCCCATTACAAGCCCAAGTTCGAGTGCACCATCTGTAAGAGAAGGATGGTCACGCAGGAGAATCTCGATCAGCACATGGTCATGCAGCACGAGAAACGGGAGAAAATCGTCTGCGCCGAGTGCGGCAAAACCTTTACTAAGAAAGATTCTTTCAAGAGACACATGGCAGTGCACACTGGGAACAAGCCCTACAATTGTGTAATTTGCAACAAGCCCTTCGCCAGGAGGTCGCAGCTCAGGCAGCACCTCCTTATTCACACAGGCAAGAGGCCCTTCGTCTGTGACATCTGCGGTAAGGCTTTCACCCAGAAGCCTGGGCTTATATGTCACAGGAAAACTCATCCCGGAACGCATCCGCCTCTCCCGGTGATGCCGATCGGTGATATTGTTAAGGAGTTCACCGAAGGATTCTTGAAAAACCATCCTCAGGGCGCTGAACTCGGAGAGGATCACGACGACCTCGAAGATgaggaagaagaggaggaagagtACGAAGAGGAAGAGATAGATCGTGAAGAAATTGTTAAGTCCGAGGTTGTCGAGGAAAATGTGGTCCACGAAGGCATGGAAGAGTAA
- Protein Sequence
- MGQLKRFGSVTIKDRNGKLIRIHCRQVIDDEGNLFEAIVPPSSIIPKSESEQDFQGDDDDFEEVTIDGVSPSVAATPIIPESRPKNSTVFMCKSCKIFFPVRHMLEKHTKTVHKISSPSVTKKRKPSFLERMKEKAAGYHKIQYSNKYGCNYCLFLTFDKSVMERHVKRRHSDKKQSVAVKTPSVVVVIESANEINNIQEEEFEEMKLEPEVTVVKQSIRNETDLVEGDMEMIEAEGIIGEVLDDESMNIEEVNVEDPISIESEVFQIDNEEQISAENLEIIENNRLLQVENEQLIQDVNEELVQHEVFVQNEELVQAEDIEFLHVDCEEVIEADNEVLIQADNEVLIQTENENFAAESQDLVDEQNILTEQFGEELSSDVWTEEDGTKKGELYTCPYCNYDGNTRTAVHNHIQKCHYDEWIAAIARKDRRRKPYKKPEFQYGPKVRSFPCEYCDYAATNRPNLNSHMKHKHPEIEREPRPKQTTEFQCDLCEFKTTERRKIQIHIERKHVTESRYPCEYCGKKFKVKCDLTSHIRFQHLRVPCVCDVCGKICTNSNALHVHQKREHYKPEFECQICKRRMVSQENLDEHIQRQHEQRIKYMCEQCGKVFDQPNKLKQHSMTHTGERPHICHLCGKAFARRAVFRQHLLIHTGQKPYTCDICGKSFTQKPGLICHRKMHPGEKPPLPVVYIDHILDKSEKKSANRAIFLFGREALVMRKWQILEFDGNPYYAFVPEDDEPIKEEAIPELQEESAALEQELNVSQESEDRKEEDEQDDKADNRSVDEETVPEEYIERLEEEIEEQDIKPVIINGNLQAPESQEAEEEEEEQIDNSQAEVYQVKVEGGVVMLEKLNVEAIETTDQDENHTVVLAESGDHPDEESQDVLGFEQEDDDEVVATIEEDVVEPEETEEFRGTTSKTGSGGSLKCRACSETFESTLAFRKHVAWTHKKKVCIVEDGAYICSVCDYRTLKKSQFAAHLQRQHETWQRKRQSSSSAMFPCAACGFVCRSKHSLQSHFIRKHTDRYEHQCKFCPKKFKVKGDLTNHVRFHHKEKPVHCDVCGKLCLNSGSLYVHQKWAHYKPKFECTICKRRMVTQENLDQHMVMQHEKREKIVCAECGKTFTKKDSFKRHMAVHTGNKPYNCVICNKPFARRSQLRQHLLIHTGKRPFVCDICGKAFTQKPGLICHRKTHPGTHPPLPVMPIGDIVKEFTEGFLKNHPQGAELGEDHDDLEDEEEEEEEYEEEEIDREEIVKSEVVEENVVHEGMEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -