Oros003042.1
Basic Information
- Insect
- Ormyrus rosae
- Gene Symbol
- -
- Assembly
- GCA_035047165.1
- Location
- JAWWML010000012.1:9881244-9884725[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.9e-05 0.0046 18.2 0.3 1 23 269 291 269 291 0.95 2 12 3.2e-05 0.0038 18.4 1.2 1 23 299 321 299 321 0.98 3 12 1.2e-05 0.0014 19.8 0.7 2 23 329 350 328 350 0.97 4 12 0.00038 0.045 15.1 1.2 1 23 356 378 356 378 0.98 5 12 3.9e-05 0.0046 18.2 2.3 1 23 385 407 385 407 0.98 6 12 1.6e-05 0.0019 19.4 0.6 1 23 413 435 413 435 0.95 7 12 1.3e-05 0.0016 19.6 0.1 1 23 441 463 441 463 0.98 8 12 7.5e-07 8.8e-05 23.6 1.2 1 23 469 492 469 492 0.96 9 12 3.9e-06 0.00046 21.3 0.5 1 23 498 521 498 521 0.96 10 12 6e-06 0.0007 20.7 2.8 1 23 527 549 527 549 0.99 11 12 9.7e-05 0.011 16.9 0.4 1 23 555 577 555 577 0.94 12 12 0.0003 0.036 15.4 0.1 1 23 583 607 583 607 0.94
Sequence Information
- Coding Sequence
- ATGTCCGGTGCAGAAAGAGATAACAATCATTGTTTGCTTTGCCACAGTAAAGTAAATGTTTCTGGAAGAAACAGTATTGCTATTTTTGGTGATAATGCTAAGACGAGTTCAGAAAAACCTATAAGTACTGTTCTTACTGACACTCTACAAACAGATATTGATGAAAACAGTGCACATTCGCCTATattgtgtaaaaaatgttttaaacttattaatgaagctGATGAACtggaaattaaattgttggaaattaaactaaaaattcgcAATTTATACAAGAAAACCTCAGCTAAACTATCAGAAGTGAATGTAAGTGGTGAAGAATATACTGACCATGATTACTTTGACAATGTTGAAACTGTGGATGTTGGACCtgacattaaaaaagaagtagaaAACAAGAAAAGATCTAAAAAAGTTACTATTTTAGAATCTTCAAATCAACTCGAAcCTGTTGAAATTAGCGAAGAAGTTATACAAGGAGGTGAAACCGTTATAGAAAATGTTGtaaatcaaattgaaaattttgtagagGACAGTAACTTTGTCGAAGAAGATACATATGATAACAGTCTTCATATTAGTAATGAAGATATGCCTGAAAATGATTCCCAAATTGAAGAAGTTATTatagaagaaaacaattttttaaaatctgacaaaataaaaaaagaagaaattgagGAGctaGTTGTAAGAGATGGTGAAGGCTACATATGCATGATATGTACAAGCGAAACCAAGGAAAGTAAAGATCCTAAATCTATAATTGCTCATTTGAAAGATGAACATGATATTCGTTTATATATCTGTGATATTTGTGgcgagcaatttaaaaaaaggactGAATTGTCTCGTCATTTAGATGATCAtgtagaaaaagaagaaggtgaTTTTCAATGTGAGGTGTGCAACCgaatatttagtaatttacgACTCTTTCGCATTCATAAACGTATTCACTATCCTCAAGTTAAATCTTGGACTTGTGAAACTTGTGGCAAACGTTACAGCTCTAAAAACTTACTTGAAGAACACACAAATACACATACTGGAAATCGACCGTACATTTGCGAAGTATGCGGTAAAGATTTTGCTTCCAAGTATACGCATCGTGCTCACGTTAAAACTCATGAAGTTAGACCGAGGCCTTTTGAATGCACACAgtgtaataaaacttttcttagtCAGCAGAATTTAACGCAACACGTTAAAACACACAGTAAtgttaaagaatatatttgcCACCAATGCggaaaagCATTTGGTTCTGCTCATAATCTTGAAGTTCATAATATTGTCCATACTGGATATAAACCGTACATTTGCCGCGTTTGCGGTAAAGCTTTCGCTCGGAAAGCAGAAATTCGAGATCACGAAAGAACACATACTGGAGAAAAGCCATACCAGTGTGAATTTTGCGGAGCTACTTTTAGcCAAAGATCGAATTTGCAATCACATAAACGAGCAACtcattataatgataaaaggTATAAATGTGATGATTGTGGCAAAGGTTTTAAGCGAAGAAGATTATTAGATTATCATATTAAAGCTGCTCACACTGGAGAACGACCATATAAGTGTGAGACTTGTACAGCAACATTTGTTTACCCtgagcattttaaaaaacacatGCGCATTCACACAGGAGAGAAGCCTTATTTGTGCGagGTTTGtggaaaagcttttaataGCAGAGATAATCGTAATGCACACAGATTTATTCACAGTGATAAAAAGCCTTATGAATGTCTAGTCTGTGGGATGGGATTTATGCGTAAACCACTACTTTATGCACATATGCAAACTCaaggTCATTTAAATGACACTATTGTAGTTAATCAACCAAGACTAACGACTGAAGAAGATGTTGTTATTCAAGATGATAGGGTGCACTTATTTATGGAAGGTGATGCAGAGCAActTTGTGAAAATGCGCAGTTAATTGTTACGGAGTTAAAAGATCATGTTATAATTCAAGATGGAGATGAACAAAATGTGTTGAGTCTTGCAGACGGAAATATTAGCGGTGAAGAAATGGAGCAATTAATAGTAGATGGACAGatgacTTTTGAAGAATCTGAGGTGATGGAGACTAAAACAGAAGATCAAGATTCCATGGAAGAAGTTTACGGTTATCAAGATGAAGAAGGAAATACTATAGTTCTGCCAGCAGGCAcagatattaaagaaattattggtGATGGAAATAAAACTGTACGATTAGTACAAATTCGTCTGCCAGCAGATGATACCGGCGATGAGAGAAGTTGGTTAAGCTTAGTACAAAActctttgtaa
- Protein Sequence
- MSGAERDNNHCLLCHSKVNVSGRNSIAIFGDNAKTSSEKPISTVLTDTLQTDIDENSAHSPILCKKCFKLINEADELEIKLLEIKLKIRNLYKKTSAKLSEVNVSGEEYTDHDYFDNVETVDVGPDIKKEVENKKRSKKVTILESSNQLEPVEISEEVIQGGETVIENVVNQIENFVEDSNFVEEDTYDNSLHISNEDMPENDSQIEEVIIEENNFLKSDKIKKEEIEELVVRDGEGYICMICTSETKESKDPKSIIAHLKDEHDIRLYICDICGEQFKKRTELSRHLDDHVEKEEGDFQCEVCNRIFSNLRLFRIHKRIHYPQVKSWTCETCGKRYSSKNLLEEHTNTHTGNRPYICEVCGKDFASKYTHRAHVKTHEVRPRPFECTQCNKTFLSQQNLTQHVKTHSNVKEYICHQCGKAFGSAHNLEVHNIVHTGYKPYICRVCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDDCGKGFKRRRLLDYHIKAAHTGERPYKCETCTATFVYPEHFKKHMRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYAHMQTQGHLNDTIVVNQPRLTTEEDVVIQDDRVHLFMEGDAEQLCENAQLIVTELKDHVIIQDGDEQNVLSLADGNISGEEMEQLIVDGQMTFEESEVMETKTEDQDSMEEVYGYQDEEGNTIVLPAGTDIKEIIGDGNKTVRLVQIRLPADDTGDERSWLSLVQNSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01111201;
- 90% Identity
- iTF_01111201;
- 80% Identity
- -