Oros007591.1
Basic Information
- Insect
- Ormyrus rosae
- Gene Symbol
- -
- Assembly
- GCA_035047165.1
- Location
- JAWWML010000052.1:8350750-8353732[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0011 0.13 13.6 0.1 1 21 62 82 62 83 0.95 2 13 2.1e-06 0.00024 22.2 0.5 1 23 164 187 164 187 0.96 3 13 0.00051 0.06 14.7 3.6 2 23 194 216 193 216 0.95 4 13 4.1e-05 0.0049 18.1 3.7 1 21 223 243 223 244 0.95 5 13 1.6e-08 1.9e-06 28.8 1.8 1 23 255 277 255 277 0.98 6 13 1.9e-05 0.0023 19.1 0.8 2 23 287 308 286 308 0.97 7 13 0.031 3.6 9.1 0.6 3 23 316 336 314 336 0.96 8 13 1.6e-06 0.00019 22.6 2.5 1 23 342 364 342 364 0.99 9 13 1.9e-05 0.0022 19.2 2.6 1 23 370 392 370 392 0.95 10 13 2.1e-05 0.0024 19.0 1.4 1 23 398 421 398 421 0.94 11 13 9.6e-08 1.1e-05 26.4 1.7 1 23 427 449 427 449 0.98 12 13 4.1e-07 4.8e-05 24.4 3.6 1 23 455 477 455 477 0.98 13 13 7.9e-06 0.00093 20.3 0.9 2 23 484 506 483 506 0.95
Sequence Information
- Coding Sequence
- ATGGGAGAAGTCGTGGaaattttaaaagtagaaaatactTACGTTCATGAAGACGGGATGACAGAAGTTGTCGCTAATTTGTATGTCAAAGATTCAGAGGaaagtacaattattataCCTGAGCTAATAGATGCAGAAGAAGtACTTGCACAAAATGGACAAATTATACAAATCATTGGAGAATACGAATGTGTCACTTGTCATCGTATTTTTCCTAGTGAAGATATGCTAAAAGAACATTTACAAGTATGCCGAGAGGAAGATGATGATGCTGATATTTTGGAATTAGGTAGGATGAGAGATTTAGATTCAGAAGACgaagaagatgaagatgaACCGGAAGATGGTAGTGCTAATGAGCAAGATAGAGCAGATTCAAGCCAATCAGataCAAGTCAAAATGACAAGAAAGTAGCAATCAAACCAGTATCAGAAAATCAATGTCACTGCTGTGCTGAAGATCTGAAAACTGCTCATTCTGGTGGTCCTTTTAAGTGTTCTAACTGTGATATGTCATTTAAAAAGCAAGCTTCTTTGGAAAGGCATTTAATAGTTATTCATTGGGAATCTGATTCATGTACGTGCAATGAATGTGGTTCAACATTTCGTGATAAAAAAGCTTTGGATAAACATCGTTATACAACTCATGTAAAAACCAGTAAAGTCTACAGATGTGAGAAATGTGATACTTATTTTTCAAGGAGCTACCACTTAAATCGTCATAAGCAACAATCTGGTTGTCATGGAGATACCAGTAATAGTTTCTCTTGCCAAGTTTGCAATAAAGTATTTACTCGTAAAGATAACTTGCGAGAACACTTGAGAACTCATGCTGGCATGcctcaaagaaaaaagaaatcttgcGACCTCTGTCCAAAGCAGTTTTACACAAATCAACAATTAATAATCCATCAACGCATGCATACTGGAGAAAGGCCTATTAATTGTGACTTATGTCCCAAAACATTTTTGTCTACACTAGCTATGAAAAAGCACCGCCGAGTACATACTGGAGAAAAACCTTTTGAATGCAAATATTGTCAAAAGAAATTTGCTGCAAGAGAAACTTTAAATCGTCATCAAAGAACGCATACAGGAGACAAACCTCATATTTGTCAGTATTGCAACAAATCATTTATCCAGGCAGCTCAATTAAGAGCGCATATATTCCATCATACAGGAGAAAACGGGTTTTACTGCGACGTTTGTGGAAAAGCTTTTAATCGCAAAGCGCGTCTTACGAACCATAAGAAATTTGTCCATGAAGGTGCTACACCATTCAAATGTGAAACATGTGACAAATCTTTTACACGAAAAGAAGATTTATCTAAGCATATCAATTTACATGCTGGAATAAAAcCCCACAAATGCGATACATGTGGAAAATGTTTTGCTGCTAAATCATCATTACAAGCACATATGAATACTCACAGGCGTGAACCTCCACAATCTTGTGCAGAATGTGGTAGAGCATTTATTCGACAAGACTGTCTTATGCGACATATACGTGCAAAACACAGAGATCTTTTAGAAGACGCACTTGgagaagcagaaaaaaaacatttacagtTACAAATGTTCAATATTGCTTATATTGCagcggaaaaaatgaaatcggGAGAAACAAATCTTCTCTCAAtagatgaattattaaaagctaTTACAGAACTTTTAACTGTtcttatagaaaaagaaacattagAGCTGTTTGGTTGGTTACAATCTCCTTTACAAGATGTTTTGGAAGCTGTTATTAGAAGATGTGGACATGAACCACTTACAGCAGATAGTGATTTACCACTGCCAGACAGACTTAGAGGAAAtgtgaaacttttatttaatgctgTCATAGAAgatgaaaatgttaaatcaTTGTTAACAACACAAACTGTTGATGAAGTAATCATGCATGTCCTTAAATTACCAAATACTAAGAAAGAACCTGAAGAAACAGAATAA
- Protein Sequence
- MGEVVEILKVENTYVHEDGMTEVVANLYVKDSEESTIIIPELIDAEEVLAQNGQIIQIIGEYECVTCHRIFPSEDMLKEHLQVCREEDDDADILELGRMRDLDSEDEEDEDEPEDGSANEQDRADSSQSDTSQNDKKVAIKPVSENQCHCCAEDLKTAHSGGPFKCSNCDMSFKKQASLERHLIVIHWESDSCTCNECGSTFRDKKALDKHRYTTHVKTSKVYRCEKCDTYFSRSYHLNRHKQQSGCHGDTSNSFSCQVCNKVFTRKDNLREHLRTHAGMPQRKKKSCDLCPKQFYTNQQLIIHQRMHTGERPINCDLCPKTFLSTLAMKKHRRVHTGEKPFECKYCQKKFAARETLNRHQRTHTGDKPHICQYCNKSFIQAAQLRAHIFHHTGENGFYCDVCGKAFNRKARLTNHKKFVHEGATPFKCETCDKSFTRKEDLSKHINLHAGIKPHKCDTCGKCFAAKSSLQAHMNTHRREPPQSCAECGRAFIRQDCLMRHIRAKHRDLLEDALGEAEKKHLQLQMFNIAYIAAEKMKSGETNLLSIDELLKAITELLTVLIEKETLELFGWLQSPLQDVLEAVIRRCGHEPLTADSDLPLPDRLRGNVKLLFNAVIEDENVKSLLTTQTVDEVIMHVLKLPNTKKEPEETE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00691361;
- 90% Identity
- iTF_01110361;
- 80% Identity
- iTF_01110361;