Oros006545.1
Basic Information
- Insect
- Ormyrus rosae
- Gene Symbol
- -
- Assembly
- GCA_035047165.1
- Location
- JAWWML010000032.1:10180368-10184989[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00098 0.12 13.8 0.7 1 23 50 72 50 72 0.97 2 19 3.4e-05 0.004 18.3 2.0 1 23 74 97 74 97 0.95 3 19 0.43 50 5.5 2.7 1 23 103 126 103 126 0.90 4 19 3e-05 0.0035 18.5 0.6 1 23 132 155 132 155 0.96 5 19 2.2e-05 0.0026 18.9 0.3 2 23 162 184 161 184 0.93 6 19 0.00085 0.099 14.0 0.6 1 23 189 211 189 211 0.96 7 19 1.2e-07 1.5e-05 26.0 0.3 2 23 218 239 218 239 0.97 8 19 0.00017 0.019 16.2 2.9 1 23 245 267 245 267 0.98 9 19 3.9e-07 4.6e-05 24.5 0.5 1 23 273 295 273 295 0.98 10 19 0.016 1.8 10.0 0.2 1 23 447 470 447 470 0.96 11 19 1.3e-05 0.0015 19.7 1.1 1 23 476 499 476 499 0.97 12 19 0.0064 0.75 11.2 1.8 1 23 506 528 506 528 0.98 13 19 0.0011 0.13 13.7 0.5 1 23 534 556 534 556 0.96 14 19 0.026 3.1 9.3 3.9 1 21 561 581 561 584 0.95 15 19 5.1e-05 0.006 17.8 4.3 2 23 597 619 596 619 0.96 16 19 0.00042 0.049 14.9 0.6 3 23 631 651 630 651 0.98 17 19 1.3e-06 0.00015 22.8 0.7 2 23 658 679 658 679 0.97 18 19 4.3e-05 0.0051 18.0 1.8 1 23 685 707 685 707 0.99 19 19 4e-08 4.6e-06 27.6 1.8 1 23 713 735 713 735 0.99
Sequence Information
- Coding Sequence
- ATGGTACGCTCCAGCAGGCGAAAACGACCAGATCAAGTTCCACCTAGTCCCGAGCGAGCCTCTCGCGTTTCTCAGCGACGACGCAACGACTTGCCCCCGAAGAAGCTCAAAATTGACGAACCCAGTCCCGAGGAGGAAGGCGAGAGACACCCGTGCGACAAGTGCGTCGAGTGCTACTCGACCGCTGAAGCTTTAGCGGAGCACGCCCGGAAGCACATATTCCAGTGCGAGCACTGCCCGCAAAACTTCCGACAGCGCAAGCTCCTCAGGCTGCACATACAGGACGAGCACAAGCACATGCCCAAGTACGTGTGCAGCGAGTGCGGCAGCATCTTCAAGTGCCGACAGTCACTGCGCGAACACTTCGTCCGCAAGCACACCGAGGGCTTCCGCTTCGTCTGCGCCACCTGCGGCAAGAAGTTTAAGATGAAGAGCGACCTGTACATGCACGTTCAGAGCATCCACAGCGAGGAACGCGAGGTCGTCTGCGACGTTTGCGGCAAAACCTACCGGAACGCCTTCGCCCTCAAGAAGCATCTGGCGCACGCGCACAATCAGCGACCTTACGCCTGCGAAATCTGCAAGCGCAAGCTCGCCACCAAGGAGTCGCTCGAGCATCACGCACAGCTGCACCTCAGAAAGGAGCGCGCCGTCTGCCAGGTTTGCGGCAAAACCTTCAGCGGTAACGACGCGCTGAAGAAGCACATGAGGATACACACGGGCGTGAGGCCGTTCCCTTGCAAGGTCTGCGGCAAGGCTTTTAGAAGGCAGAATACGCACAAGCAGCACCTGCTTACCCACACCGGAGTCAAGCCCTACATATGTGATATTTGCGGCAAGAGCTTTACCCAGAAGCCGGGCTTGATCACGCACAGGAAGAAGCACCCTGGACccctgccgccgctgccggcgATTTCGATAGATTACGTCATTGCTGATTTGATGGAGAAGCAGGATGCTAATAAAGGGCAGCCTGTCGATGAGGTGTTGTCCGAGGATATTAATCTTACAAGCTTGACGCCATTGACGCCGATTCTCACGGACTTCGTAACATCGATGTTCCCGATGCCAGATTCCTTATTTTTCACCGCATCCGAAGTTCCTGACTTGGTCGACTCGGAGGTTTTGATCTTCGAGCAAACGAATTCAGTCTTCGCGGAAGAAATCGTCGAGTTCGCCAAATCAGAAGAACTACCCTTCGCCAACGTAGAGTCCATGAACTTGAACGATATGGAAGTCCCTGTCCTTTCGATCCCAGAAACCGATTCCATAAGCAAAGCAAGGGAAGACCATCAAGTCGTGCCGAACGCGGAACGTCCGCAACGCTTCCGCGTAAACCATTACTGTAACGTCTGCCTGGCTGGGTTTACCAACGAGGCAAAGCTCGGCGAGCACATGCAGAGCATTCACAATATCGAGCGGCCCTTCGAGTGCAATATCTGCGGTCAGACCTTCCGCACGTCGCTGAACATCGCGCGTCACAAGCGCAGCAAGCACGACCTGGACATTAAGAAATACAGCTGCGAGCGTTGCAAGTACACCACTTACGCAAAAAAGAACCTGGAGATCCACGAGCGACGTCACTCCAAGAGCTACGCGTTCCCCTGCGACCTTTGCGGCAAAGGCTTCATGCAGCGCACCAAATTCGAGGAGCACAAGCTGCTGCACGACGGCAAGGGCTACGAGTGCCAGGTCTGCAAGAACGTCTTCCATTACAAGCGCAACCTCGTCACCCACATCAAGTGCGTCCACCCGGAGACGGTCGGCAACTACAACGGCAAGCTCCTCCAGTGCAAGTATTGCCCGCGCAAGTTCACCAACGAGAACAGCTACAAGAGACACCACAGGGTCAGTCATAAGAACttcctgccgccgccgcagaAATCGCTCTGCGACTTGTGCGGCATGCAGCTGAGCACGCCGACTGCTCTGCGCCACCATATGAGGGGACACAAGGGGGAGAAGGTCGCCGAGTGCGACGTTTGCGGCAAGTCCTTCTCCAAATTGAATAATCTCAAGGTTCACAAGAGGATCCACACCGGGGAGAAACCGTACAAGTGCACCTTTTGCGACAAGGGATTTACGCAGAGGACCAGCATGGTGTACCACGTGAGGGTGCACAAAGGCGAGAGGCCGTATCAGTGCTCCGACTGCGGCAAGTCATTCATCTCCAATTCTTTCCTGAGGAAACACGTCAAGACGCACGAGAAGAGCGTGAAGGGCAACGACGAGATAAAATGCAACTAG
- Protein Sequence
- MVRSSRRKRPDQVPPSPERASRVSQRRRNDLPPKKLKIDEPSPEEEGERHPCDKCVECYSTAEALAEHARKHIFQCEHCPQNFRQRKLLRLHIQDEHKHMPKYVCSECGSIFKCRQSLREHFVRKHTEGFRFVCATCGKKFKMKSDLYMHVQSIHSEEREVVCDVCGKTYRNAFALKKHLAHAHNQRPYACEICKRKLATKESLEHHAQLHLRKERAVCQVCGKTFSGNDALKKHMRIHTGVRPFPCKVCGKAFRRQNTHKQHLLTHTGVKPYICDICGKSFTQKPGLITHRKKHPGPLPPLPAISIDYVIADLMEKQDANKGQPVDEVLSEDINLTSLTPLTPILTDFVTSMFPMPDSLFFTASEVPDLVDSEVLIFEQTNSVFAEEIVEFAKSEELPFANVESMNLNDMEVPVLSIPETDSISKAREDHQVVPNAERPQRFRVNHYCNVCLAGFTNEAKLGEHMQSIHNIERPFECNICGQTFRTSLNIARHKRSKHDLDIKKYSCERCKYTTYAKKNLEIHERRHSKSYAFPCDLCGKGFMQRTKFEEHKLLHDGKGYECQVCKNVFHYKRNLVTHIKCVHPETVGNYNGKLLQCKYCPRKFTNENSYKRHHRVSHKNFLPPPQKSLCDLCGMQLSTPTALRHHMRGHKGEKVAECDVCGKSFSKLNNLKVHKRIHTGEKPYKCTFCDKGFTQRTSMVYHVRVHKGERPYQCSDCGKSFISNSFLRKHVKTHEKSVKGNDEIKCN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -