Oros009379.1
Basic Information
- Insect
- Ormyrus rosae
- Gene Symbol
- -
- Assembly
- GCA_035047165.1
- Location
- JAWWML010000062.1:2089886-2091938[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.2e-08 2.8e-05 24.5 0.0 1 35 15 49 15 56 0.91
Sequence Information
- Coding Sequence
- ATGGTTCGAAAATACATTCGAAAAAGTCAAAGAAAATCATGGTCTCCCGATGCGATGAGAATTGCCATCGAAGCTGTAATAAAACAGGGATGTAGTATTAGAAAAGCCTCCATAGAAAATGAAGTTCCTCATGCAACGCTTTCCAGAAAAATTCACCAGTGCAGAATTGATCCTGAGAAGCAATTAGAGTTGATTACTAATCCCAAAGGATCGAATTTTCAAACTGTATTTAGCAAGGAGCAAGAGAATATTTTATGTCAGTATATTAATACATTGGAAAGTCAGTGTATAGGATTAAGTGGGATGGATATAAGACGTTTAGCTTTTCAAGTAGCTGAAAAGTATAAGCTTCCacatagatttaataaatgtgtAGAAACAGCTGGAGAAGATTGGTATcgaggatttttaaaaagaaatcctATTGTGtctgttaaaaaatctgaCAATATTACTGAAAAGTCACAAGAAGTGAATAGAGAGAAAGTtcacaacttttttaatctgctAGAAAGTAAGATTGATAACTATCGGTTAGAGGCTAGTGATGTATATGCTGTAGATGCCACAGTAATAACTTGTTTGTTAAAACCTGAATGTAAATCTGAAACCTTGGCATGTAGTGAAGAAtctgaaagttttaaaaaaagtcaaagtaAGCTTGTCACAGCAGTAATGTGTATTTCTGCAAGTGGTGTTTACACACCTCTTATGCTTATTTCTccatgtaaaagtaaaatgaagataattaaAGATGAACAACCTCAGGAGTGGATGCAGTATGATCCATCAGGTCAAATGAAGTTATCCATCTTTgtaaaatggttaaaaaagtttatacaattttctaaTGCTGATAAAAATTCTCCTGTACTTCTAATCTTAGACGATTATCGTtcttatttaaagaatttgcaAGTACTTGATATAGCCAAAGACAATGGAGTTCATATAATATGCTTGCCACCTCATTGTACTGATAAATTACATCCaatgcattataattttatgaaaacattAAGTACATCTTACTCtaatgaaattgttaaatgGTCTTATTTGAATTCTGATCAACCAATTACAGTAGATGAAGTATTCCAACTGTTCAAAAGTACATTTACAAAGGTTTCATCAACAGTTTCTCCTGTCAATGGTTTTCGTTATACAGGTATTTGGCCAGTAGATAGGAATatgtttgaagaaaatattatttcttcaaaagaaGAAAGTACAAGTGCAAATACCAGTGCAACttcagaattatttaaatcagttGTTGAAGAAGCTtgtcaagaaattattttaacaggCATCTCTGATGATAAATTACCTTCAACAATGTTTGGCAGTACTGCACATGAACCAATTGTAGTTATTACACAAAATAGTAATCAACCATTTGTTTTGCAATCAATAGAAACTATAAATGATCAAGATGCACAATTTATTCAACAATATCAATTCATTAAAGAGAAAACTGTACAATcagaaGATAATGTTGTAATAGATGACGCAGTGATAAATAATTGtcaagaaaataatcaagaaaatGATATAAGTTCGATTGTTATTCCTCCCGAGGCACAATTATCAGAAGTAAATGTAGAAGATTTACAGAACTTAATTAAAAGCCAAAgacaactttatttttacgtgtcaccttataaattgaatttgtga
- Protein Sequence
- MVRKYIRKSQRKSWSPDAMRIAIEAVIKQGCSIRKASIENEVPHATLSRKIHQCRIDPEKQLELITNPKGSNFQTVFSKEQENILCQYINTLESQCIGLSGMDIRRLAFQVAEKYKLPHRFNKCVETAGEDWYRGFLKRNPIVSVKKSDNITEKSQEVNREKVHNFFNLLESKIDNYRLEASDVYAVDATVITCLLKPECKSETLACSEESESFKKSQSKLVTAVMCISASGVYTPLMLISPCKSKMKIIKDEQPQEWMQYDPSGQMKLSIFVKWLKKFIQFSNADKNSPVLLILDDYRSYLKNLQVLDIAKDNGVHIICLPPHCTDKLHPMHYNFMKTLSTSYSNEIVKWSYLNSDQPITVDEVFQLFKSTFTKVSSTVSPVNGFRYTGIWPVDRNMFEENIISSKEESTSANTSATSELFKSVVEEACQEIILTGISDDKLPSTMFGSTAHEPIVVITQNSNQPFVLQSIETINDQDAQFIQQYQFIKEKTVQSEDNVVIDDAVINNCQENNQENDISSIVIPPEAQLSEVNVEDLQNLIKSQRQLYFYVSPYKLNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01110030;
- 90% Identity
- iTF_01111687; iTF_01110030; iTF_01110866; iTF_01113340;
- 80% Identity
- -