Basic Information

Insect: Ormyrus pomaceus
Gene Symbol: -
Assembly: GCA_900474385.1
Location: UCOM01002990.1:5187-12175[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.016 1.5 9.8 0.3 1 23 126 149 126 149 0.96

2 13 7.7e-06 0.00075 20.1 1.1 1 23 155 178 155 178 0.97

3 13 0.0072 0.7 10.8 2.1 1 23 185 207 185 207 0.98

4 13 0.00065 0.063 14.1 0.5 1 23 213 235 213 235 0.96

5 13 0.016 1.6 9.7 3.9 1 21 240 260 240 263 0.95

6 13 7.1e-05 0.007 17.1 4.1 2 23 276 298 275 298 0.96

7 13 0.00025 0.025 15.4 0.6 3 23 310 330 309 330 0.98

8 13 1.8e-07 1.7e-05 25.3 0.5 2 23 337 358 337 358 0.97

9 13 2.6e-05 0.0025 18.5 1.8 1 23 364 386 364 386 0.99

10 13 2.4e-08 2.3e-06 28.0 1.8 1 23 392 414 392 414 0.99

11 13 0.0017 0.17 12.8 0.1 2 23 467 489 467 489 0.96

12 13 4.4e-05 0.0043 17.8 3.3 1 23 495 517 495 518 0.96

13 13 0.0031 0.3 12.0 1.9 3 23 525 546 524 546 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.016	1.5	9.8	0.3	1	23	126	149	126	149	0.96
2	13	7.7e-06	0.00075	20.1	1.1	1	23	155	178	155	178	0.97
3	13	0.0072	0.7	10.8	2.1	1	23	185	207	185	207	0.98
4	13	0.00065	0.063	14.1	0.5	1	23	213	235	213	235	0.96
5	13	0.016	1.6	9.7	3.9	1	21	240	260	240	263	0.95
6	13	7.1e-05	0.007	17.1	4.1	2	23	276	298	275	298	0.96
7	13	0.00025	0.025	15.4	0.6	3	23	310	330	309	330	0.98
8	13	1.8e-07	1.7e-05	25.3	0.5	2	23	337	358	337	358	0.97
9	13	2.6e-05	0.0025	18.5	1.8	1	23	364	386	364	386	0.99
10	13	2.4e-08	2.3e-06	28.0	1.8	1	23	392	414	392	414	0.99
11	13	0.0017	0.17	12.8	0.1	2	23	467	489	467	489	0.96
12	13	4.4e-05	0.0043	17.8	3.3	1	23	495	517	495	518	0.96
13	13	0.0031	0.3	12.0	1.9	3	23	525	546	524	546	0.97

Sequence Information

Coding Sequence: atggatataaataataatgattgGTTGTCCGAGGATATTAAGCTTACAAGCTTGACGCCATTGACGCCGATTCTCACGGACTTCGAAACATCGATGTTCCCGATGCCAGATTCCTTATTTTTCACCGCATCCGAAGTTCCTGACTTGGTCGACTCGGAGGTTTTGATCTTCGAGCAAACGAACTCAGTCTTCGCGGAAGAAATCGTCGAGTTCGCCAAATCAGAAGAACTGTCCTTCGCCAACGTAGAGTCCATGAACTTGAACGATCTGGAAGTCCCTGTCCTTTCCATCCCAGAAACCGATTCCATAAGCAAAGCAAGAGAAGACCACCAGGTCGTGCCGAACGCGGAACGTCCGCAACGCTTCCGCGTAAATCATTACTGTAACGTCTGCCTGGCTGGGTTTACCAACGAGGTAAAGCTCGGCGAGCACATGCAGAGCATCCACAATATCGAGCGGCCCTTCGAGTGCAATATCTGCGGTCAGACCTTCCGCACGTCGCTGAACATCGCGCGACACAAGCGCAGCAAGCACGACATGGACATTAAGAAATACAGCTGCGATCGGTGCAAGTACACCACCTACGCCAAAAAGAACCTGGAGCTCCACGAGCGACGTCACTCGAAGAGCTACGCGTTCCCCTGCGACCTTTGCGGCAAAGGCTTCATGCAGCGCACCAAGTTCGAGGAGCACAAGCTGCTGCACGACGGCAAGGGCTACGAGTGTCAGGTCTGCAAGAACGTCTTCCATTACAAGCGCAATCTCGTCACCCACATCAAGTGCGTCCACCCGGAGACGGTCGGCAACTACAACGGTAAGCTCCTCCAGTGCAAATATTGCCCGCGCAAGTTCACCAACGAGAACAGCTTCAAGAGTCACCATAGGGTCAGTCATAAGAACctcctgccgccgccgcagaaGTCGCTCTGCGACTTGTGCGGCATGCAGCTGAGCACGCCGACTGCTCTGCGCCACCATATGAGGGGGCACAAGGGGGAGAAGGTCGCCGAGTGCGACGTCTGCGGCAAGTCTTTctcaaaattgaataatctGAAGGTTCACCAGAGGATCCACACTGGGGAGAAACCGTACAAGTGCACCTTTTGCGACAAGGGATTTACGCAGAGGACCAGCATGGTGTACCACGTGAGAGTGCACAAAGGTGAGAGGCCGTACCAGTGCTCCGACTGCGGCAAGTCATTCATCTCGAATTCTTTCCTGCGTAAACACGTCAAGACGCACGAGAAGAGCGCGAAAGGCAAGGAGGAAATAAAATGCAACAATGGGAACGGCTACGCTCTCCACGATTCTTTTAAGGAACTGGATAATATCGACTACTATAAAATCAAGCAAGAAATCATCGACTCCTTCGTAACCACGGACCCAGTGTCCGACCGGGTCTGCGACTTCTGCGGCGAGACCTTCGCCTACCTGAATCGCTTGGTCGCCCACCTCAGCACCGTCCACGGTATCGAGCGACCGTTCAAGTGTCCGCTCTGCGACAAGGATTACCCGCACCGCTTCATGCTCAACGCCCACGCCAGGAAGCACCACGGCTTCAGCCTCGTCGCCTGCGCCCACTGCAGCTACTCCACCATGGACCGGACCAAGCTCGAGAGGCACATACGCAAGCTGCACAACAACGAGCTGCCCGTCAGCGTCGCCGCCAAGAACGACAGCCTCGAGTACATCTCGaatttatcataa
Protein Sequence: MDINNNDWLSEDIKLTSLTPLTPILTDFETSMFPMPDSLFFTASEVPDLVDSEVLIFEQTNSVFAEEIVEFAKSEELSFANVESMNLNDLEVPVLSIPETDSISKAREDHQVVPNAERPQRFRVNHYCNVCLAGFTNEVKLGEHMQSIHNIERPFECNICGQTFRTSLNIARHKRSKHDMDIKKYSCDRCKYTTYAKKNLELHERRHSKSYAFPCDLCGKGFMQRTKFEEHKLLHDGKGYECQVCKNVFHYKRNLVTHIKCVHPETVGNYNGKLLQCKYCPRKFTNENSFKSHHRVSHKNLLPPPQKSLCDLCGMQLSTPTALRHHMRGHKGEKVAECDVCGKSFSKLNNLKVHQRIHTGEKPYKCTFCDKGFTQRTSMVYHVRVHKGERPYQCSDCGKSFISNSFLRKHVKTHEKSAKGKEEIKCNNGNGYALHDSFKELDNIDYYKIKQEIIDSFVTTDPVSDRVCDFCGETFAYLNRLVAHLSTVHGIERPFKCPLCDKDYPHRFMLNAHARKHHGFSLVACAHCSYSTMDRTKLERHIRKLHNNELPVSVAAKNDSLEYISNLS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -