Opom007526.1
Basic Information
- Insect
- Ormyrus pomaceus
- Gene Symbol
- -
- Assembly
- GCA_900474385.1
- Location
- UCOM01002132.1:21490-24391[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0035 0.34 11.8 0.4 1 22 119 139 119 139 0.93 2 14 0.0021 0.21 12.5 3.5 1 20 146 165 146 168 0.94 3 14 0.00061 0.06 14.2 0.4 1 23 174 197 174 197 0.92 4 14 3.6e-06 0.00035 21.2 0.9 1 23 203 225 203 225 0.98 5 14 1.6e-05 0.0016 19.1 0.7 1 23 348 370 348 370 0.98 6 14 0.002 0.19 12.6 0.1 2 21 380 399 379 400 0.93 7 14 0.00031 0.03 15.1 2.6 1 20 422 441 422 444 0.92 8 14 0.013 1.3 10.0 0.3 1 23 449 472 449 472 0.95 9 14 4.6e-06 0.00045 20.8 0.3 1 23 478 500 478 500 0.99 10 14 0.00013 0.013 16.3 4.2 1 23 507 529 507 529 0.99 11 14 0.00036 0.035 14.9 0.4 3 23 537 557 535 557 0.97 12 14 0.00042 0.041 14.7 0.2 1 23 563 586 563 586 0.96 13 14 0.034 3.3 8.7 0.0 1 23 600 622 600 622 0.97 14 14 0.014 1.4 9.9 0.0 2 23 870 891 869 891 0.96
Sequence Information
- Coding Sequence
- ATGATGGAGGctaatgaaaatgaacaataCGTTACATTTGCTTTAGAAAATGTACATGAAgGTATGCAAGACAACATATCTCATGAAGAAATATGTGAGCCCGTTGATGAGTGCGTTTTACAAGATGGCTTAAACGAAGTCACAGTAGATGATGTAAACCAAGATATTACAGAGACACAAGTTGTTGAAATATTGACAGAAAATTCTGAAGGAGATGAAGATCAAGATTCTGTTGTCTATcctatttatataaagaagGAATCTTCGCAACAATTTACAACAGGAGATGAGTCAATGGCTGTTGAAGCTTTGAGACAATTGGGTGGAATGTATCCTTGTTTTgaggataaaaaatttgcatgtaGTAACtgtaataatacatttactCAGTCAGAATTAGCCAAACATCAATCTACTTGCAGTTCTGATAATAAGCATTTTTGTAGTACATGTGGAGAAaagtttgaaagaaaaatagatttaactAATCACATGGTCTGTCATCAAGTGGATAGACCTCATGCTTGTAGAACTTGTGGAAATCTATTTCGATCAAAAGCTAATTTACAAGTACATATGGCTGAAGTTCATCAAATTGAAAGATTTCATAAATGCACAGTGTGTGGAGCAGAATTCCAAAGACCATCAAGCTTGTCTAATCATATGAAAATTCATAGTTATATTGCAGGCAGAGCTTTGATGCAAAACCAAACAAACAATGCAAATGCAAGTACTGGTACTATAAAAACTGTTTCTGAGCCTCAAGAAACAGTTTTGGCAACTACTGTTCAAACCATacagaattttgaaatacctCAAGTACAATGGTCTGTGCAAACATACAATTTTAGTACTGATCAAAGTAATGATGATCTTGCTAATCAAACTGATAAAATGGATACATTGCAAGAATTTACTGTCTTGCCTAATGGAGAAGTTGCTCAATTTGAATATACGACACAAAACACAatggAAGTTGCCAATTTTAATAACgataacaaaaaaacttatgttgaaattgatttacaaGAAAGCACATCACATACTTGCAGTCAGTGTGGTGTTAGCTTTGCACGGGCTGGATCTTTAACCTTGCACGAAAAGACCCAtgccaaaaataatttaacctACCCAGTAGAGTGTGAGTATTGCGATAAACAATTTCAAGATGCTAATTATTTAGCTATTCATCAAACATCCTGTACAAAAAAGTTAATGCAAAGTAATTCAGAAtcaaatacatcaaactcAAAGTGGGGAAAACATGCTTGTTCagaatgtggaaaaaaatttaccacaaaacaaaaaatgtttagacaTCAATGGATTCACAGAAAAAAAACCCATTCTTGTGAGGTGTGCGGTTCCCAATTTGAGAAACAGGCAGAACTAGATGAGCATAGATTATCAGCTCATCCAGGAGACTCGCCATACACTTGTTATGTATGTGGTAAAAGTTTTGTTTCTCGACAAGGACTTTGGGAACACGGTAGAACACATGCTGGAAGTCCAGCATATTTTCAGTGTGATACCTgctcaaaaactttttcatccAGGCAGGGATATTTAATACACCACCGTACGCACACAGGAGAACGACCGTACGGCTGTAAATTTTGCTGGAAAGCATTTCGTGACGGTGGTACTTTAAGAAAGCATGAAAGAATACATACTGGGGAAAGACCTCATGTTTGTCCATTGTGTTCAAGGGCATTTAATCAAAAAGTTGTACTACGAGAACATGTTAGATGGGTTCATGTGGCTgggaaaaatgaaactgaAGCTGCTGAACCACCGTTTCCCTGCCCTTTATGTGGAATATTAGCACAGGATAGAGATGAGTTGTGTGCACATATTGTTAAACATTCAGATCAAATGATAGCAGAAGCAAAAGCTAAATCTACCAATGTTGTTGTAAAACCAAAACCTCAAAAGAGAAGAGGTAAAGTAGCAGTATcagaaacaaaaacaaaaacagttCAACCAAAGGCAACTGCAATAGGAAGAGTGATTACTGCAGCGGAACAAAATGAAGCTTTACTTTCTATAACAGAGCAAATGGATGTTAGTACAGAAACTCAAGATACTTTTCTAGTAGTAAAAGATGATTATAATGAGGCTGTTTGTATTAAGGCATACAAAGCAAAGGAGGCATCTGAAGCAGATGAACAAAACGATGCTATTAATGTAATAACTATTGCTAAATCATCTGACAttgaaaatacagaaaaaactgttaatataattaatagacAAAGTAATCTTAATACCATGCATTTGATACCTTTCACTACATCTGGGGAAACCATTCATCTGATATCAACAAGTAAAGCAAACAATACTTTACATTTGATATccaaacaaaatgaaaacttacCTGTTTTAGCAATCCCTAACCCTGAGTCAGATGAAAACTACTCAAATCAAATTCCTCAAATAGATGATTCTACAGCATTAAATATAGTTACAAACAGTTCCGAAGTAAATGAGGAAGAAAATGAACACGAGATTCATACAGAAACTATGATAGTTGAACCGATTAGTATAGAAGTTGATAATGAGCAAATAATAGACCAAGAAGAAAGTGATGATGAAAGTGAGGAATTAGTATGTGGTATATGTGGAAATGACTTTGATGATAAAAACGTATTAATGGAACatgtaaaaattcatatataa
- Protein Sequence
- MMEANENEQYVTFALENVHEGMQDNISHEEICEPVDECVLQDGLNEVTVDDVNQDITETQVVEILTENSEGDEDQDSVVYPIYIKKESSQQFTTGDESMAVEALRQLGGMYPCFEDKKFACSNCNNTFTQSELAKHQSTCSSDNKHFCSTCGEKFERKIDLTNHMVCHQVDRPHACRTCGNLFRSKANLQVHMAEVHQIERFHKCTVCGAEFQRPSSLSNHMKIHSYIAGRALMQNQTNNANASTGTIKTVSEPQETVLATTVQTIQNFEIPQVQWSVQTYNFSTDQSNDDLANQTDKMDTLQEFTVLPNGEVAQFEYTTQNTMEVANFNNDNKKTYVEIDLQESTSHTCSQCGVSFARAGSLTLHEKTHAKNNLTYPVECEYCDKQFQDANYLAIHQTSCTKKLMQSNSESNTSNSKWGKHACSECGKKFTTKQKMFRHQWIHRKKTHSCEVCGSQFEKQAELDEHRLSAHPGDSPYTCYVCGKSFVSRQGLWEHGRTHAGSPAYFQCDTCSKTFSSRQGYLIHHRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHVAGKNETEAAEPPFPCPLCGILAQDRDELCAHIVKHSDQMIAEAKAKSTNVVVKPKPQKRRGKVAVSETKTKTVQPKATAIGRVITAAEQNEALLSITEQMDVSTETQDTFLVVKDDYNEAVCIKAYKAKEASEADEQNDAINVITIAKSSDIENTEKTVNIINRQSNLNTMHLIPFTTSGETIHLISTSKANNTLHLISKQNENLPVLAIPNPESDENYSNQIPQIDDSTALNIVTNSSEVNEEENEHEIHTETMIVEPISIEVDNEQIIDQEESDDESEELVCGICGNDFDDKNVLMEHVKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01111204; iTF_01113642; iTF_01110365; iTF_01112861;
- 90% Identity
- iTF_01113642; iTF_01111204; iTF_01110365; iTF_01112861;
- 80% Identity
- -