Opom000136.1
Basic Information
- Insect
- Ormyrus pomaceus
- Gene Symbol
- -
- Assembly
- GCA_900474385.1
- Location
- UCOM01000043.1:98880-104275[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 6e-06 0.00059 20.5 0.7 3 23 318 338 316 338 0.98 2 22 7.8e-06 0.00076 20.1 3.5 1 23 344 367 344 367 0.95 3 22 0.00015 0.015 16.1 0.4 1 23 373 395 373 395 0.97 4 22 1.1e-06 0.0001 22.9 0.8 1 23 401 423 401 423 0.98 5 22 0.2 19 6.3 6.4 1 23 429 451 429 451 0.96 6 22 0.00046 0.045 14.6 0.7 1 23 457 479 457 479 0.96 7 22 0.026 2.5 9.1 3.2 1 23 561 583 561 583 0.99 8 22 2.5e-06 0.00024 21.7 0.9 2 23 590 612 589 612 0.94 9 22 0.069 6.7 7.7 0.4 1 23 618 640 618 640 0.98 10 22 4.4e-06 0.00043 20.9 2.6 1 23 646 668 646 668 0.96 11 22 0.00043 0.042 14.6 0.6 1 23 674 696 674 696 0.98 12 22 0.00027 0.027 15.3 1.1 3 23 704 724 702 724 0.98 13 22 9.9e-05 0.0097 16.7 2.3 1 23 730 753 730 753 0.96 14 22 0.0012 0.12 13.2 0.1 1 23 789 812 789 812 0.98 15 22 4.5e-05 0.0044 17.7 4.2 1 23 826 848 826 848 0.98 16 22 5.3e-06 0.00052 20.7 0.6 1 23 872 894 872 894 0.99 17 22 0.00035 0.035 14.9 0.1 2 23 901 923 900 923 0.93 18 22 0.023 2.3 9.2 0.1 1 23 929 951 929 951 0.96 19 22 0.0071 0.69 10.8 0.9 1 23 957 979 957 979 0.94 20 22 4e-05 0.0039 17.9 2.0 1 23 985 1007 985 1007 0.98 21 22 1.1e-05 0.0011 19.6 0.4 1 23 1013 1035 1013 1035 0.97 22 22 0.0007 0.068 14.0 2.7 1 23 1041 1063 1041 1064 0.93
Sequence Information
- Coding Sequence
- atgGACGAAACAAGTAATGTTCATATTGTGGCCATCAGCAATGATGGAATTATCATACGTGATTCAAAAGAGCTCACAGAAAAGggtgaagaaataaaaacgacTGAATATTTCTTAGATGTTGAAGACCAACACATAGAGGAAGGAGATCTAGATGCACAATATGTAACTGTAGAAAATGTatgtaaagaaaatgaaagcgaGCAATACGTAGCTGTTGATGTTGACGATTCCAGTGGAATCATTTTAgaagataaagaaataatattatggaACGAACTCTGCCGAATATGTGCCAATGGAAGTGATCGATTTGTTCCAATATTCACTGATGAAGGATTAGAACATGATTTGTGtaacaaaattcaaacttatttACCATTAGAggTAACTGAAAATGATAGTCTTCCTCATCAGTTATGCTACAACTGTGCAGCAACTTTATTGGCATGGCATGACATGTTTAAAGGTTGTCTTGACGCTCAACAACGTCTTGAggaaatgcaaaataaatttcacttgAAGGATCAGGATTATAATGATTCTGCAAATGAGGAAGAAAATATTCACATTGCTCCAGATGTTGAAACGAATATCGAAGAATCAAAAatacacAGTAAAGAAATGGAAGATGTACAAATGGAACAAATCATTGATGAGACTAATTCAGACAGGTCCAGAAATATGGAACTtgagaagaataaaaaagaaacaaacatTTCAAGTACATATAATCACAACATTACTGCTGATGTATGCAGAATGGCAGTAACAAACTGGACCAACTCTGAAACAAAGCAAATTGAATCAAATCTAGCACCTTTACAaagcacaaatttaaataaaatctcgaATATTTCcgagaataaaaatgaaagtattttaaacttaccagaacaaggaaataaaaaaatgaaacgaaaaattaaaatattacatgaaTCTTACGGATGTGATGATTGTGGccgtttattcaaatttaaagacTCCTTAACTCGTCACTTGCGAATTCATAGAAATGAGCGTCCCTTCACCTGCCACATGTGTGGTAAGCAGTTTAGAGATTCGGGTGGACTTTGCAGACACCTAAAAGACGTGCATGCTCGCCTGAAAAAATTTGCTTGCGAAATCTGCGGCAAAAATTTTGCGTCTAAAGCTACCAGAGATGATCATCGAAGGACGCACACTGGAGAACGTCCTTACGTTTGTGATATTTgtggaaaaacttttaaatctaaaGCATCGCTCTACACACACAGCAAGATTCATACTGAGGACTTCCCTCATTCCTGTTTGCAGTGCGAAAAAAAGTTCCGCAGAAGGCAAGAACTATTGTGCCACCTATCAACACATACTGGCGAGAAAAATTTCGCGTGCGAAGTGTGCTTTAGAAGATTCAGGCTGAAAAATGAACTTAAGAGACATGCACTTGTTCATTCTAATGAAAAGCCTTTTGCTTGTCATTTTTGTGACTTTCGATGCGTGGATATTTCGGACGGTGATGTGATCTGCACCATCCTAACGACGGTGTCAACAGCCTCGGCACCCAGAGGGCGTCGACAGCGAAAGACCAAGGATCTGACCATCAAAAGAGCAACGATGAAAGCGGCAAATCCTCAAAGTCTACAACGTCGCATGGAAGCAGCTCAGGCTAAAGTCGTTGCCAATGGAGTTACTTACTATAAGTGTGGCACATGCATGAAACATTTGTCAACTGCATATAACTACTTTGCACACAAACGCATTCACACGAAGGAGAAGCTATGCACATGCGAAATGTGTGGCAAAAGCTTTACTGCCGCCTCATCTTTGACAAGGCACGTGCGTGAGGTCCACTACCAAATCAAGGAATATTCTTGTGGTTTTTGCGATAGAAAATTGGCTTCAAAAATCGCGAGAGATGAACATCAGAGAACTCATACGGACGAGCGACCACATGTATGTGATCAATGTGGCAAGAGTTTTAGGCAAAGGGCTTCTCTAAATGTGCATAAACGGTTTCACTCAACaacttttatgtttaaatGTACCCTCTGTGCAAGGGGATTCCCTCGAAAGCAGGATATGGAGAGGCACGAACTCACGCATACTGATCAGAAACCATATGGGTGTAAACTGTGCAGTAAGACTTTTAGAAGCTCAGCATCGGCAATTAGACACAGACAGACCCACGAAACAGAATGCAAACATATGTGCGAGGAGTGCGGAGAAAGTTACACTCAGGAAAGATATCTAAAAAATCATAAGAAAAAAGTACACAAAAGGCTATCCCATGTCTTTCATTACAGAGATTTCTCGTCGTatgatgaaaatgaagaacAAGAAAGCCAGGATGCAAATCAAAAGCAAGAAGAAGACTTCGTGTACATGTGTGGCGTCTGCGATGAATTCTACGAATCTGAACAAGCTGTAATGCGTCACATGCGCAGTAATCATTCGGAGCACATAAACACTAAGACGCTAAATCCAGTTTGTTATGAGTGTCACATATGTTTTAAAACCTACAGACGAAAGCAATATTTGGTCAAACATCTGGAGAGTCATACCGTGGAGTTACCTGGCGAGGATGGCATCGTCGAAAAAGCCAAGATTTTTCGCAATCACGTTTTAACTTATAAATGCGATGATTGCGGACAATCTCTAACGAACCGTCGAGCCTTTATTCGTCACGTTAGGATGCACGCGGATGAAAGACCAATTGTCTGTGATGAATGTGGCAAAAGGTATCGCATCGAGGGCGATCTGAAGCGTCATGTTAACGACGtgcatcgaaaaattaagCGATTTCCTTGCGATATTTGCGGCACGTTTTTCGCTGCGAAAATTACCCGCGACGCTCATCGACGTATTCATACAGGCGAGAAACCTTTTGCCTGTGATCAGTGCGGCAAATACTTTCGCTCGGTCAATCTTCTGGGAGTGCACAAACACATTCACACAGACTATCGTCCCTATGAATGCTCCTATTGTCAAAAAACCTTCAGGAATAGACAGAAGGTTACAATACATGAACGGATTCATACCGGTGACAAACCCTTTCCTTGTGATATTTGTAACAAGATGTTTACGTCAAAGGGCGAAGTTATGAGGCACCGAACGATTCACTCTAATGAAAAGCCATATTTATGCTCCGAGTGCGGTCTAAGATTTAGATTGAATAGATACTTGAGAATGCATATCAAACAGCATCACCCAGACAAGGCTGAGGAGTTGCTTAATGCTATGCAGAGAAGTTAA
- Protein Sequence
- MDETSNVHIVAISNDGIIIRDSKELTEKGEEIKTTEYFLDVEDQHIEEGDLDAQYVTVENVCKENESEQYVAVDVDDSSGIILEDKEIILWNELCRICANGSDRFVPIFTDEGLEHDLCNKIQTYLPLEVTENDSLPHQLCYNCAATLLAWHDMFKGCLDAQQRLEEMQNKFHLKDQDYNDSANEEENIHIAPDVETNIEESKIHSKEMEDVQMEQIIDETNSDRSRNMELEKNKKETNISSTYNHNITADVCRMAVTNWTNSETKQIESNLAPLQSTNLNKISNISENKNESILNLPEQGNKKMKRKIKILHESYGCDDCGRLFKFKDSLTRHLRIHRNERPFTCHMCGKQFRDSGGLCRHLKDVHARLKKFACEICGKNFASKATRDDHRRTHTGERPYVCDICGKTFKSKASLYTHSKIHTEDFPHSCLQCEKKFRRRQELLCHLSTHTGEKNFACEVCFRRFRLKNELKRHALVHSNEKPFACHFCDFRCVDISDGDVICTILTTVSTASAPRGRRQRKTKDLTIKRATMKAANPQSLQRRMEAAQAKVVANGVTYYKCGTCMKHLSTAYNYFAHKRIHTKEKLCTCEMCGKSFTAASSLTRHVREVHYQIKEYSCGFCDRKLASKIARDEHQRTHTDERPHVCDQCGKSFRQRASLNVHKRFHSTTFMFKCTLCARGFPRKQDMERHELTHTDQKPYGCKLCSKTFRSSASAIRHRQTHETECKHMCEECGESYTQERYLKNHKKKVHKRLSHVFHYRDFSSYDENEEQESQDANQKQEEDFVYMCGVCDEFYESEQAVMRHMRSNHSEHINTKTLNPVCYECHICFKTYRRKQYLVKHLESHTVELPGEDGIVEKAKIFRNHVLTYKCDDCGQSLTNRRAFIRHVRMHADERPIVCDECGKRYRIEGDLKRHVNDVHRKIKRFPCDICGTFFAAKITRDAHRRIHTGEKPFACDQCGKYFRSVNLLGVHKHIHTDYRPYECSYCQKTFRNRQKVTIHERIHTGDKPFPCDICNKMFTSKGEVMRHRTIHSNEKPYLCSECGLRFRLNRYLRMHIKQHHPDKAEELLNAMQRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -