Opom021743.1
Basic Information
- Insect
- Ormyrus pomaceus
- Gene Symbol
- -
- Assembly
- GCA_900474385.1
- Location
- UCOM01004326.1:1023-2794[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.00014 0.17 11.9 0.1 5 28 1 23 1 23 0.94 2 2 0.00041 0.51 10.4 0.1 4 30 220 245 218 255 0.86
Sequence Information
- Coding Sequence
- ATGAAGGCTGCCTTGACCGCCTTGAATCAGGGGATGTCGTTCAGAAAGGTTGCGAAGTACTACGATGTCATTATACTCGAGGAGGAAAGCGTCATTATTAAGCAAGAACCTGGTAATAGTGATGAAAATGTTAAGATTAAACAAAGATTAAAGCGCAAATTAGAAGAAGAcagcttaaaaatgaaagaatccTCAGACACCGAGGAGGGACACATCATTTTCATCAAACAGGAGGACGTCTCTTACGAGGACGAAGACGAATATGATCTTGACTTTGTCGACGTGGAAGACGTAAACCTTGAAGCAGAAGATGAAGAAACTTTAAGAAGTTCAAACGAAATAGAAGACGATGCAGATCTGATAGATGTTGAAGATGAATTAGAATTAGGAGAATTAAGAGCAACAAATAGGAAAAAACCCACCCCCAAGCAAGCCTCCAGAACAAACGAAGAAGTTAGAATAGCCGAAGGGACGCCCGAAAAGATCGCCTACAAAGTGGTGACGCCCACGACTCGCTTGAACCTCGACACCTTCGAGGGTTGGTGCATGCGGAACGTCGGCGGTGTCAAGAAAGCGGTGCAGTACAATACGCCAAGGAGGCCGAGGAGCAGAGCTTTCTCTGGTCCGAAGCCCGATTTGATATATCGCATGACGGCGAACCTGCGGATGGCTCTGGAGGCCGTCGACAAGGGCATGGCTTACGACGACGCGTCGAGGGCTTACGGGATATCCGAGGCCAGGCTGCGCAGTATTAAGGAGCTCGAGGCCGCGAATCCTGCTTACATTCTGCACCgtcACTCGCTTCAGAAGCCTAAAAATTATGACCCGACCACGATATTTAAGAAGAATTGA
- Protein Sequence
- MKAALTALNQGMSFRKVAKYYDVIILEEESVIIKQEPGNSDENVKIKQRLKRKLEEDSLKMKESSDTEEGHIIFIKQEDVSYEDEDEYDLDFVDVEDVNLEAEDEETLRSSNEIEDDADLIDVEDELELGELRATNRKKPTPKQASRTNEEVRIAEGTPEKIAYKVVTPTTRLNLDTFEGWCMRNVGGVKKAVQYNTPRRPRSRAFSGPKPDLIYRMTANLRMALEAVDKGMAYDDASRAYGISEARLRSIKELEAANPAYILHRHSLQKPKNYDPTTIFKKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -