Onit008268.1
Basic Information
- Insect
- Ormyrus nitidulus
- Gene Symbol
- -
- Assembly
- GCA_900474335.1
- Location
- UCOL01001066.1:28356-31292[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0062 0.82 11.0 0.4 3 21 8 27 6 28 0.85 2 13 0.094 12 7.3 0.3 1 12 225 236 225 245 0.89 3 13 0.016 2.1 9.7 0.9 1 21 366 386 366 387 0.96 4 13 2e-05 0.0026 18.9 0.7 2 23 392 413 392 413 0.98 5 13 0.027 3.6 9.0 2.4 1 23 424 446 424 446 0.95 6 13 0.16 21 6.6 0.1 1 23 465 486 465 486 0.89 7 13 0.00047 0.061 14.5 0.0 2 23 492 513 491 513 0.95 8 13 4.9e-05 0.0064 17.6 4.8 1 23 572 594 572 594 0.99 9 13 2.2e-06 0.00029 21.8 4.7 1 23 600 622 600 622 0.98 10 13 0.00013 0.017 16.3 4.6 1 23 628 650 628 650 0.98 11 13 1.5e-06 0.00019 22.4 0.8 1 23 656 678 656 678 0.98 12 13 9.3e-05 0.012 16.7 0.2 1 23 682 704 682 704 0.99 13 13 4.6e-05 0.0061 17.7 0.5 1 23 712 734 712 734 0.98
Sequence Information
- Coding Sequence
- ATGGGTTCGATCAGTCTTATGTGCCCTATGTGCTGTGGAGAGACGTTCAGTAATTCAGAGTCTCTCAAATATCATTTACTCAGTATGACGGACAATCTTTATTGTCCTGCTTGTTCGTTAAGGACTTATTCAGTAGCTGCATTGATACAGCATTTAGATTCTTGTGGAAAAGTGACTGAAGAGGATCAATCTAGAGAAGATATGGATAatggtaaattaaaagaaaatgcaaaggAAGGACCTGATATTTTAATGgaagGTGACGATGCAATCACTGATAGTTTTTTAGCTACTGTAAATGAAGAAGGAATAATGATAGTTGGTGAAGGCAGAACCATTCAAGTAGATGAAAATGGAGATATTCAAGTATTAGAAAAACTAACTACAATACCTGATGATGATGAATCGATGCACATGGCTACTTGTGATAAGGATGTAACTAGTACATCAGAAGAAGATAACCAAGTGTCTGAATCCTCTGCTTTATTAGTGCAGAACTCAGATATGTCTTCAAAACAAGATGAAACTATAACGaatatatcattattaaatgagAATGATAATGGATTAGTTTCAATGGCACAATTTGATGAAGTTCAATTTGATGATCAGGGCATACTGATagttaagaaagaaaatttaacaactGAAAAAGAGGAGGAAGAAGTTATGTACAGTTGCAGTACATGTGGTATGAGTTTCACATCTGTATTAGAGcatattaaagtttatcaCGATGGACAAGAGGTTGTGTTAGAAATGGCTGAGCAGCAAAtagatgaaattgaaaatgctaCAATTGAAGCAGCTCCAATTACTTCAATTCTAGATACTTCTCAGACAGCAAATAGTACtactaaaaaaactaatgttCCAATGAAACAAAGGCAATCAATGAATACTTTAAGAACAGAAGAATGTATTGATAGTGATGGAAGATCCTATACTAGAAAAGTTGTacaaattgaaagattttggGATCGAACACCTGTAAATTTGTCTTCAACTAAAGCCccaatgattgaaaaatttttctccaatGTTGAAGGAGTgaaggttAGAGATAAAAGTGTAACTGTAGCCCCAACTAAAATGTATAGATGTAATCAATGTTTAGAACAATTTCCTAAGCTAGGTGATTTTCGAGTTCATATGTGCCTTCAAGGAAACAATAGATGTGATCAATGTGATCAAACTTTTGCAACGATGAAAGCTTTGCAATCGCATATGAAAGTGCATGAAAACAGTGACTTTCcttctcaaaaaatatttttgtgtacAGTCTGTGgaactgaatttttaacacATAAAAGTTTACGGCTGCATTCAAGAATGCACAACCCTGTAAGGGCAAGGCATGTCGATGCACCTGAAGGAACAGAAGAAGAAACTTTTGATTGTAAAGAATGCGGTACAACACTTTCAGAATCATACAGAGCAGCTCATATGGCTCTGCATGCCGGTAATACGATCACGTGTCCGGTATGTAATCGCAAATTCGATTCAGCCGAAAGTTTAGCGATGCATGCAGCTGTTCACAATGAGCAACAAGTCATGAATTCTCCAAGCATGCCTGCAAACGATCTCACTATTGCGAATTCGCAAGATTCTGTTGATAATACTTTTGTTAGTGCTAATACAACTGACATTACGAACACAGCAACTGCTACTACAGCAGCTGAATCTGCAGATGCTCAAAATAGTACTAAACCTTATCAATGTCAACACTGTGGTCGGAGATTTACGAGACCTCACGAAAAAGTTAAACATGAGAGGATACATACTGGAGAAAAGCCACATTCTTGCgagGTATGTGGTAAAACGTTCCGAGTTTCCTACTGCTTAACACTGCATATGCGAACACACACAGGTGTACGTCCATACGAATGTCAACACTGTGGTAAACGTTTCAAAGCTTCGTCAGTGTACAACCATCATCTATTAACTCACGGCGAAGAGCGCGCATACACCTGCCCCTATTGTCCAAAGACTTTTAAAACGCGAGTTCAACTTGCAGGTCATAAAAACAGTCATACAAAACCATTCCGATGCACCGAATGCTCGAGACCGTTTGCTTCATTGTACGCTGCACGAGCTCACATACAGACGCATAAGAAAgataataatcttaaattcaGTTGTCACATTTGCGGTGCATCGTACGGTCGAGCATTTGCGCTCAAAGACCATATAAAACAGCATGAAAAAGAGAACACCATTGTGCCACCTGAAGCTGCCCGGGAAGAAGAAATTCAAGAAGTTGAAAGTTTTCTAGTACAAGACGAAGAGGAGCCTGAAGAGGAACTCATTGTGCCCTCGCCACCTGCTCGTAATAGTATGTCTATTGATCTTGATTGCGACTAG
- Protein Sequence
- MGSISLMCPMCCGETFSNSESLKYHLLSMTDNLYCPACSLRTYSVAALIQHLDSCGKVTEEDQSREDMDNGKLKENAKEGPDILMEGDDAITDSFLATVNEEGIMIVGEGRTIQVDENGDIQVLEKLTTIPDDDESMHMATCDKDVTSTSEEDNQVSESSALLVQNSDMSSKQDETITNISLLNENDNGLVSMAQFDEVQFDDQGILIVKKENLTTEKEEEEVMYSCSTCGMSFTSVLEHIKVYHDGQEVVLEMAEQQIDEIENATIEAAPITSILDTSQTANSTTKKTNVPMKQRQSMNTLRTEECIDSDGRSYTRKVVQIERFWDRTPVNLSSTKAPMIEKFFSNVEGVKVRDKSVTVAPTKMYRCNQCLEQFPKLGDFRVHMCLQGNNRCDQCDQTFATMKALQSHMKVHENSDFPSQKIFLCTVCGTEFLTHKSLRLHSRMHNPVRARHVDAPEGTEEETFDCKECGTTLSESYRAAHMALHAGNTITCPVCNRKFDSAESLAMHAAVHNEQQVMNSPSMPANDLTIANSQDSVDNTFVSANTTDITNTATATTAAESADAQNSTKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHSCEVCGKTFRVSYCLTLHMRTHTGVRPYECQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCHICGASYGRAFALKDHIKQHEKENTIVPPEAAREEEIQEVESFLVQDEEEPEEELIVPSPPARNSMSIDLDCD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01112875;
- 90% Identity
- iTF_01112875;
- 80% Identity
- -