Basic Information

Insect: Ormyrus nitidulus
Gene Symbol: -
Assembly: GCA_900474335.1
Location: UCOL01001999.1:3598-7669[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 6.4e-06 0.00084 20.4 1.3 1 23 147 169 147 169 0.97

2 15 2.3e-05 0.0031 18.6 0.4 3 23 177 197 176 197 0.99

3 15 7.8e-05 0.01 17.0 0.1 1 23 292 314 292 314 0.98

4 15 0.0027 0.36 12.1 0.3 1 23 320 343 320 343 0.97

5 15 0.0002 0.026 15.7 1.9 1 23 370 392 370 392 0.97

6 15 1.8 2.3e+02 3.3 0.0 1 23 407 429 407 429 0.86

7 15 0.045 6 8.3 0.3 2 23 436 458 436 458 0.95

8 15 0.09 12 7.3 1.7 5 19 469 483 466 487 0.90

9 15 0.0002 0.026 15.7 3.5 3 23 495 515 493 515 0.97

10 15 0.014 1.9 9.9 0.1 3 23 522 542 521 542 0.97

11 15 8.4e-06 0.0011 20.0 0.4 1 23 551 573 551 573 0.98

12 15 0.0036 0.48 11.7 0.2 3 23 581 601 579 601 0.97

13 15 0.0032 0.42 11.9 0.2 3 23 609 629 607 630 0.94

14 15 0.057 7.5 8.0 0.0 1 23 644 666 644 666 0.92

15 15 0.0084 1.1 10.6 0.0 1 20 1096 1115 1096 1118 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	6.4e-06	0.00084	20.4	1.3	1	23	147	169	147	169	0.97
2	15	2.3e-05	0.0031	18.6	0.4	3	23	177	197	176	197	0.99
3	15	7.8e-05	0.01	17.0	0.1	1	23	292	314	292	314	0.98
4	15	0.0027	0.36	12.1	0.3	1	23	320	343	320	343	0.97
5	15	0.0002	0.026	15.7	1.9	1	23	370	392	370	392	0.97
6	15	1.8	2.3e+02	3.3	0.0	1	23	407	429	407	429	0.86
7	15	0.045	6	8.3	0.3	2	23	436	458	436	458	0.95
8	15	0.09	12	7.3	1.7	5	19	469	483	466	487	0.90
9	15	0.0002	0.026	15.7	3.5	3	23	495	515	493	515	0.97
10	15	0.014	1.9	9.9	0.1	3	23	522	542	521	542	0.97
11	15	8.4e-06	0.0011	20.0	0.4	1	23	551	573	551	573	0.98
12	15	0.0036	0.48	11.7	0.2	3	23	581	601	579	601	0.97
13	15	0.0032	0.42	11.9	0.2	3	23	609	629	607	630	0.94
14	15	0.057	7.5	8.0	0.0	1	23	644	666	644	666	0.92
15	15	0.0084	1.1	10.6	0.0	1	20	1096	1115	1096	1118	0.94

Sequence Information

Coding Sequence: ATGGATGTCGGTGGAGATCTGACCCTACAATGGGTTGAAGAAGTAGGAAATGTTATTCACGAAGAAGTAATATGTGGTCTAGAAGCAGAATTAGATGCTCCTGTAGAGCAGATGGTGGGAGCATGCGAGGAAGTCACGGGGGAGGAGACCGTGGAATCTGTTGTGGAAGATACTACTCCCATAGCAGATACAGAGATCCTCATGGTTTCACAAACAAGTGATATGGAATCAATATATGTTATACCACAAGATCAAGGACATGATTATCTCAACATCCAAGTTACTGAAGAAGTTATCACTGATAACTGGGATAGATCTGGACCAGATGATGGaatggAAGTACCAGAAACTAAAGTTTCACATGACAATTTACTAGAATATGATGATATGGAAATTCCCTTGCCAATTGATCAAGATTCTTATACAAATACAAGACCATATCCTTGTGATTTTTGCAGTAAAAGATTCAGAAAAAAGGCAAATCTGATGAATCATATGGTTTCCCATCAAACAGAGCGCCCTCATGGTTGTAATTTGTGTGGTACTCGTTATGCAAGAAAATCTGATTTAATGAACCATTTGAAAATACATGCATATGCTCCCTCTCGTGATGGTTTGGAAGATGATTTGGAGGATCCATTAGCaactgaagaagaagaaaatcatcCTGTGAAAGGCAGACGTAAAAAAGTGCAGACTAATATTCCTAGGAAACGTAAAACTGTACCTGCAGGTACTAAAAGGACTGTAGATGAAGGTGCAAAAATGGATATAAACAATcctaattttgatttatgctTCAGATGGAATGAACAACTTGTACCACATGAGCAACAGGTGCCTAGGTGGCCAGTTACCGATGCTACAAAGCCATATGTGTGTCAGTTTTGCGGTGTAAGTTTTGCAAGAGAAAAAGCTCTTGCATCACATGCTCGTATCCATGGTGGAGATAGTCCGTTTGAGTGCACTTCCTGTGGAGAAATGTTTTGGGATGTTAATACTCTCCAAGAGCACATGAGAAGTAAGCATGGCATTGCCATAGGACAATCTGATCAAGAAGAGGTAGAAAATGAATCAACCTATGCAGGAGATGAAAGGTTTGGAGAATTCTTCTGTGATACATGTGGAGTTCCCTTTCATCGATTAGATCTTTTAAAACGTCATAGAAAgattcatataaaacaagaaattggTACAATTGAAGGCTCCAGTCAACATCATGTTTGCAACGTGTGCGGAGAATGGTTTGAAGAAGCATTAGCACTATTAGCTCATGCAGAATTGCATGCTagGTCGCCTAGTCGCAGATGCTTATTGTGCGGTGAAAGGTGTCGTGACGATGCTGAATTAGCTGAACATGTTCGCGAGATGCATGCGGAAGATGCTCCTCCAAATACATGTATACTTTGTGGAAAAACTTGCAAAGATAAACggagtttattaaaacattcatGGATACATAATACTGATAAAACATTTGGATGTACTAAATGTGGAAAAAGATTCCATAGTAAAGCGAGATTACgaagACATATGGTATCGCATCGTAATAAAATGGTTGCTTGTGACGAGTGTGGTGAGGAATTCCCTGATGGACGAGCCCTCGTTAGTCACCGTCACTCGCATAACAAAGACTTGGGAGGACGAACATTTCCTTGCAGAGAATGTGGCAAGACTTTTGGAAGTCGTAGTTCTCAACAAATACATATCCGCATACATACTGGTGAAAGACCTTACGGCTGTAGATTTTGTTGGAAGGCCTTTGCTGATGGTGGTACACTCAGAAAACATGAGAGGATACATACAGGAGAGAAACCTTATGGATGTGCCATATGTCCCCGTGCTTTTAATCAAAgagttGTTCTTCGAGAACACGTTAGAGCGCATCACTCGGGTCCTGATCCAAAATGTCATAATAGTCTTACACCTTACTTATGTAAAGTTTGTGGAGATACCTTACCCACATCTGACGAACTTGTTGCTCACATAGTAGCACACTGTGATGAAAATACAGCTATGCGCAGACAGCCTCAGTCTGGACCAAGAAAGTATAAACGTAGGCGTAAGCTGAAACACGAAGGTACATCATTCGGTACTCGTTTAAGTGAGTCCTTTGATATGCTTGACGGTCATTCTGATTCGGATGAGAATACGAAACGCAAACTAGGTAGAAAAAGTAAACAGCACCGTTCTAATGTTGAAGAAGGATATCAAAATGTCCTTAAGAGTTTCGAAAGTTCtctgcaaaatattaattcaatagtTAGTAATTCTAAAACTTATCCAACTAAAACGAAAActccgaagaaaaaaatgaaaaaggaagaaaagaaaggtgGTTCAAGTGCAGCTGCTGGAGCTGATACTCCAACTACAAATCATCCCGGCAGACCAAAAATGATCCACACACAAAAGACGCGAGTACCTGTGGAAATAGGTACTGATGGTGTAAAGAAGGGGCAGAAGACAAAAACGATGGTAACGAGAACACCTAAAGTAATGCCAAACGAGCAGCCGGTAGCTTCATCATCAACAAAACCTCCTGGTAGTTTCACTGGTGGTGAAAGGAACAGACCACGTACTAAGAATGTAAGTTATCACGTGGAGGGCAGGCAGCAACTTTTACCTGCCACATTTCCTAAACCAAAGCTGGATGAACCTATTATTGATGAAAGACCAACAATAGAAATGGTGAACATAAAAGTCGAGCCAGGACTACCAAAAGTAATGACAAATCataatgcaattaataataatggtgACATACTTGGTGTTAAGGAAGACAAAGAAGAGAAATCAGAGAAAACGGTAAAGAGACGGGGACCTGCCAAAAGGGCAAAGAGGAGGCAAACAGTCACTACCAGGAGGACTAGAGAAAAAGCAGCACTACCTTCTACTTCTGAGCTGCCTAGTAATACGAATTTTGATACGGACGATGCTGCAGAGGGAACTTTGGAACAagaacaacagcaacaacagtTGGAAATATCGCAGCAAGAGCATCAGGTACAACCGACACAGCTGTTCGAATCAGTGGTAGATGGTAACAATCTTGAGGTAGCATTCGAGGCGAACGTTGTTTCTGAACAAGATGACATGGTGCAAGAGTCGATACTTCCGGACCTGGATAAAGTGAATCACATAGAAGAGATTGCTTCCACTGGAGGTAATGTTAAACTCAGCGTAAAAGTTGAATCGGCACCAGACGGAATACTTGATGTGCATAGCATTATAGGTTCTGTTGAAGAATCTGTGCCAGAGACCATAATACCGGATACGATTGAGTACACCTGCGAAATGTGTGCCGCGGTGTTTTCAACGCGAGCCGAATTGCTCGTGCATGTTCCCATACATATTTGA
Protein Sequence: MDVGGDLTLQWVEEVGNVIHEEVICGLEAELDAPVEQMVGACEEVTGEETVESVVEDTTPIADTEILMVSQTSDMESIYVIPQDQGHDYLNIQVTEEVITDNWDRSGPDDGMEVPETKVSHDNLLEYDDMEIPLPIDQDSYTNTRPYPCDFCSKRFRKKANLMNHMVSHQTERPHGCNLCGTRYARKSDLMNHLKIHAYAPSRDGLEDDLEDPLATEEEENHPVKGRRKKVQTNIPRKRKTVPAGTKRTVDEGAKMDINNPNFDLCFRWNEQLVPHEQQVPRWPVTDATKPYVCQFCGVSFAREKALASHARIHGGDSPFECTSCGEMFWDVNTLQEHMRSKHGIAIGQSDQEEVENESTYAGDERFGEFFCDTCGVPFHRLDLLKRHRKIHIKQEIGTIEGSSQHHVCNVCGEWFEEALALLAHAELHARSPSRRCLLCGERCRDDAELAEHVREMHAEDAPPNTCILCGKTCKDKRSLLKHSWIHNTDKTFGCTKCGKRFHSKARLRRHMVSHRNKMVACDECGEEFPDGRALVSHRHSHNKDLGGRTFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYGCAICPRAFNQRVVLREHVRAHHSGPDPKCHNSLTPYLCKVCGDTLPTSDELVAHIVAHCDENTAMRRQPQSGPRKYKRRRKLKHEGTSFGTRLSESFDMLDGHSDSDENTKRKLGRKSKQHRSNVEEGYQNVLKSFESSLQNINSIVSNSKTYPTKTKTPKKKMKKEEKKGGSSAAAGADTPTTNHPGRPKMIHTQKTRVPVEIGTDGVKKGQKTKTMVTRTPKVMPNEQPVASSSTKPPGSFTGGERNRPRTKNVSYHVEGRQQLLPATFPKPKLDEPIIDERPTIEMVNIKVEPGLPKVMTNHNAINNNGDILGVKEDKEEKSEKTVKRRGPAKRAKRRQTVTTRRTREKAALPSTSELPSNTNFDTDDAAEGTLEQEQQQQQLEISQQEHQVQPTQLFESVVDGNNLEVAFEANVVSEQDDMVQESILPDLDKVNHIEEIASTGGNVKLSVKVESAPDGILDVHSIIGSVEESVPETIIPDTIEYTCEMCAAVFSTRAELLVHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01219230;
90% Identity: iTF_01113643;
80% Identity: -