Onit024797.1
Basic Information
- Insect
- Ormyrus nitidulus
- Gene Symbol
- -
- Assembly
- GCA_900474335.1
- Location
- UCOL01000025.1:78175-83114[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.8 1.1e+02 4.4 0.3 2 23 214 236 213 236 0.90 2 18 0.035 4.7 8.6 0.8 1 23 248 271 248 271 0.96 3 18 0.047 6.2 8.2 3.5 1 23 286 309 286 309 0.93 4 18 0.00017 0.022 15.9 5.8 1 23 315 337 315 338 0.95 5 18 0.27 35 5.8 1.1 3 23 345 366 343 366 0.94 6 18 0.0016 0.21 12.8 0.4 1 23 371 394 371 394 0.96 7 18 3.8e-07 4.9e-05 24.3 0.4 2 23 401 422 400 422 0.96 8 18 1.2e-06 0.00016 22.7 0.4 1 23 428 450 428 450 0.97 9 18 4.1e-05 0.0054 17.9 1.0 1 23 456 478 456 478 0.98 10 18 0.0028 0.36 12.1 0.5 1 23 630 653 630 653 0.95 11 18 2.5e-05 0.0033 18.5 1.2 1 23 655 678 655 678 0.95 12 18 0.45 58 5.2 2.7 1 23 684 707 684 707 0.90 13 18 9.6e-05 0.013 16.7 0.6 1 23 713 736 713 736 0.96 14 18 2.1e-05 0.0027 18.8 0.3 2 23 743 765 742 765 0.93 15 18 0.00089 0.12 13.7 0.6 1 23 770 792 770 792 0.96 16 18 1.3e-07 1.7e-05 25.7 0.3 2 23 799 820 799 820 0.97 17 18 0.00017 0.023 15.9 2.9 1 23 826 848 826 848 0.98 18 18 4.1e-07 5.4e-05 24.2 0.5 1 23 854 876 854 876 0.98
Sequence Information
- Coding Sequence
- ATGCGCAAGTGGCAAATCCTGGAGTTCGACGGCAACCCCTACTACGCCTTCGTGCCCGAGGACGACGAACCGATCAAGGAGGAAGCGATTCCCGAGCTCCAGGAGGAGTCTGCCGCTCTCGAGCAAGAGCTAAATGTCAGTCAAGAGAGCGAAGATAGGAAGGAGGAGGATGAGCAGGATTATAAAGCCGATAATCGCTCGGTAGACGAAGAGACGGTCCCTGAAGAGTACATCGAAAGGCTCGAGGAAGAAATCGAGGAGCAAGATATCAAGCCTGTCATTATCAATGGAAATCTGCAGGCTCCGGAAAGCCAAGAAGCCGagaacgaggaggaggaggaggaggagcaaaTCGACAACTCCCAAGCAGAGGTGTACCAGGTCAAGGTCGAGGGCGGCGTGGTCATGCTCGAGAAGCTCAATGTCGAGGCTATAGAAACGACAGACCAAGATGAAGGTCATACTGTCTTGCTCGCAGAAAGCGGGGATCATCCAGACGAAGACTCCCAGGACATTGTAGGCTTCGAGCaagaagacgacgacgaggtCGTAGCTACCATTGAGGAGGACGTCGTCGAGCCCGAAGAGACCGAAGAATTCCGGGGTACCACCTCCAAAACTGGCAGCGGCGGATCGCTCAAATGCAGGGCCTGCTCAGAGACGTTCGAGTCGACGCTGGCCTTCCGCAAGCACGTTGCTTGGACGCACAAGAAGAAGGTGTGCATCGTAGAGGACGGTGCCTACATCTGCTCGGTGTGCGACTACCGGACGTTAAAGAAGAGCCAGTTTGCGGCACATCTGCAGCGCCAGCACGAGACGTGGCAGCGTAAGCGACAGAGCTCCTCCTCGGCGATGTTCCCCTGTGCCGCCTGTGGCTTCGTCTGCCGTTCTAAACACTCGCTCCAGTCGCACTTTATCCGCAAGCACACGGACCGCTACGAACACCAGTGCAAGTTCTGCCCCAAGAAGTTTAAAGTCAAGGGCGACCTCACGAACCACGTGCGCTTCCATCACAAGGAGAAGCCTGTGCACTGCGACGTCTGCGGAAAACTCTGCTTGAACAGCGGCTCGCTCTACGTGCACCAGAAGTGGGCCCATTACAAGCCCAAGTTCGAGTGCACCATCTGTAAGAGAAGGATGGTCACGCAGGAGAATCTCGACCAGCACATGGTCATGCAGCACGAGAAACGGGAGAAAATCGTCTGCGCCGAGTGCGGCAAAACCTTTACCAAGAAAGATTCTTTCAAGAGGCACATGGCAGTGCACACTGGGAACAAGCCCTACAATTGTGTAATTTGCAACAAGCCCTTCGCCAGGAGGTCGCAGCTCAGGCAGCACCTCCTTATTCACACAGGCAAAAGGCCCTTCGTCTGCGACATCTGCGGCAAGGCTTTCACCCAAAAGCCTGGGCTTATATGTCACAGGAAAACTCATCCCGGAACGCATCCGCCCCTCCCGGTCATGCCGATCGGTGATATTGTTAAAGAGTTCACCGAAGGATTCTTGAAAAATCATCCTCAGGGCGCTGAACTCGGAGAGGATCACGACGACCTCGAAgacgaggaggaagaggaggaagagtACGAAGAGGAAGAGATAGATCGTGAAGAAATTATCAAGTCCGAGGTTGTCGAGGAAGATGTGGTGCACGAAACCATGGAAGAgAGGAAGACAACGTTACGACGAGCAAGACTCCGCAGGCGTTTCGCAGCAATCTCAACGACAACGATCGGCAATCCAACGGTACGCTCCAGCAGGCGAAAACGACCGGATCAAGCTCCACCTAGTCCCGAGCGAGCCTCTCGCGTCTCTCAGCGACGGCGCAACGACTTGCCCCCGAAGAAGCTCAAAATTGACGAACCCAGTCCCGAGGAGGAAGGCGAGAGACACCCGTGCGACAAGTGCGTCGAGTGCTACTCGACCGCCGAAGCTTTAGCGGAGCACGTCCGAGCGAAGCACATATTTCAGTGCGAGCATTGCCCGGAAAACTTCCGGCAGCGCAAGCTCCTCAGGCTGCACATACTGGAGGAGCACAAGCACATGCCCAAGTACGTGTGCAGCGAGTGCGGCAGCATCTTCAAGTGCCGGCAGTCGCTGCGCGAACACTTCGTCCGCAAGCACACCGAGGGCTTTCGCTTCGTCTGCGCCTCCTGCGGCAAGAAGTTCAAGATGAAGAGCGACCTGTATATGCACGTGCAGAGCATCCACAGCGAGGAGCGCGAGGTCGTCTGCGACGTTTGCGGCAAAAGCTACCGGAACGCCTTCGCCCTCAAGAAGCATCTGGCGCACGCGCACAATCAGCGACCTTACGCCTGCGAAATCTGCAAGCGCAAGCTCGCCACCAAGGAGTCGCTCGAGCATCACGCCCAGCTGCATCTCAGAAAGGAGCGCGCCGTCTGTCAGGTTTGCGGCAAAACCTTTAGCGGTAACGACGCGCTGAAGAAGCACATGAGGATACACACGGGCGTGAGGCCGTTCCCTTGCAAGGTCTGCGGCAAGGCTTTCAGAAGGCAGAATACGCACAAGCAGCACTTGCTTACCCACACCGGAGTCAAGCCCTACATATGTGATATTTGCGGCAAGAGCTTTACCCAGAAGCCGGGCTTGATTACGCACAGAAAGAAGCACCCTGGACccctgccgccgctgccggcgaTTTCGATAGATTACGTCATTGCTGATTTGATGGAGAAGCAGGATGCTAATAAAGGGCAGCCTGTCGATGAGGTGTAA
- Protein Sequence
- MRKWQILEFDGNPYYAFVPEDDEPIKEEAIPELQEESAALEQELNVSQESEDRKEEDEQDYKADNRSVDEETVPEEYIERLEEEIEEQDIKPVIINGNLQAPESQEAENEEEEEEEQIDNSQAEVYQVKVEGGVVMLEKLNVEAIETTDQDEGHTVLLAESGDHPDEDSQDIVGFEQEDDDEVVATIEEDVVEPEETEEFRGTTSKTGSGGSLKCRACSETFESTLAFRKHVAWTHKKKVCIVEDGAYICSVCDYRTLKKSQFAAHLQRQHETWQRKRQSSSSAMFPCAACGFVCRSKHSLQSHFIRKHTDRYEHQCKFCPKKFKVKGDLTNHVRFHHKEKPVHCDVCGKLCLNSGSLYVHQKWAHYKPKFECTICKRRMVTQENLDQHMVMQHEKREKIVCAECGKTFTKKDSFKRHMAVHTGNKPYNCVICNKPFARRSQLRQHLLIHTGKRPFVCDICGKAFTQKPGLICHRKTHPGTHPPLPVMPIGDIVKEFTEGFLKNHPQGAELGEDHDDLEDEEEEEEEYEEEEIDREEIIKSEVVEEDVVHETMEERKTTLRRARLRRRFAAISTTTIGNPTVRSSRRKRPDQAPPSPERASRVSQRRRNDLPPKKLKIDEPSPEEEGERHPCDKCVECYSTAEALAEHVRAKHIFQCEHCPENFRQRKLLRLHILEEHKHMPKYVCSECGSIFKCRQSLREHFVRKHTEGFRFVCASCGKKFKMKSDLYMHVQSIHSEEREVVCDVCGKSYRNAFALKKHLAHAHNQRPYACEICKRKLATKESLEHHAQLHLRKERAVCQVCGKTFSGNDALKKHMRIHTGVRPFPCKVCGKAFRRQNTHKQHLLTHTGVKPYICDICGKSFTQKPGLITHRKKHPGPLPPLPAISIDYVIADLMEKQDANKGQPVDEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01113636;
- 90% Identity
- iTF_01113636;
- 80% Identity
- -