Basic Information

Gene Symbol
stc
Assembly
GCA_035582975.1
Location
JAWWEO010000001.1:22987207-22992652[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 4 2.9e+04 -4.4 1.6 15 19 574 578 573 578 0.81
2 15 0.29 2.1e+03 -0.5 0.1 4 10 607 613 606 614 0.94
3 15 1.9e-06 0.014 16.1 14.5 3 19 623 639 622 639 0.91
4 15 1.8e-06 0.013 16.2 15.6 1 18 675 692 675 693 0.98
5 15 1.8 1.3e+04 -3.0 0.8 6 10 721 725 720 725 0.89
6 15 1.3e-09 9.5e-06 26.2 15.4 1 18 731 748 731 749 0.98
7 15 3.1 2.3e+04 -3.8 1.4 5 10 778 783 778 783 0.93
8 15 7.2e-06 0.052 14.3 13.7 4 18 796 810 789 811 0.86
9 15 3.3 2.4e+04 -3.8 2.0 5 10 840 845 840 845 0.93
10 15 0.029 2.1e+02 2.7 11.3 1 11 851 861 851 873 0.87
11 15 2.6e-08 0.00019 22.0 12.3 1 19 878 896 878 896 0.98
12 15 1.9 1.4e+04 -3.1 1.1 6 10 925 929 924 929 0.89
13 15 0.39 2.8e+03 -0.9 4.1 10 19 943 953 940 953 0.79
14 15 4.5e-06 0.033 14.9 12.2 1 16 989 1004 989 1014 0.86
15 15 6.1e-05 0.45 11.3 14.1 1 19 1021 1040 1021 1040 0.97

Sequence Information

Coding Sequence
aTGGCCACTTGGGATGGTTCTTATCCAGAACCAGATGGGTCCAATTATTACGTTAATTCGGATAGGAATGCACCAGTCAATGTTCCAGCATGGAATTATTATGTGCCCAATGCCAATAATTCATACCCTCAGAATCCAGCAACCCCATATGCATTGGAAACATCTATGGTCTTTGAACAAAGCACTCCTAATTATTACAACTATGTCGACACAACCATTCCATCATTGATGCCAAATGCCACACCAAACACTAATGCATATCCAAGCAATGCAATAGAAGCAGTTTCCAATAAGggcCATATGGGATCATCTGAAACACACGCAAATAATAGCAACAATCAGGCGCAGTGCTTCTTTGAAGATAACAAAGCATTAGCACAGCAACAACAAACATCtacttattattacaataatagaAGCAATcatcatcaaaataaaaataaacgtaaagaTGTCAATAAATCTTACCAAGTATCTGATATAGTTGAACATTCAAATTTGCATGCTAATGCTACTGAATTTATTCCTaaccaaaataaatatgataaaacaAATTCTGTACAACACCAAAATGGTAAGGGTCGAGGTATTAACGACTATCAAGGTCATGAAGTAAACCAAGCATCCAATCATGCCTTCTTTGAAGATAATAGAGCTAGAGTCAATGATAGGAAATTTGAGAATAAGAGAGATGCTGGCAGAAGGTGGAGAGACAATCAGAATGGTCAGCATCACAAAGATGATAAAAAGGATTATGGAAGAAATCAAAATCCTAGGAGGTATCAAAATGATAAGTATAACCATAatagaaattatgaaaataatagatCAAGAAATAATCGATCCACTAGAGATGACGCAGAAAGTGTTTCCTCAGAAACTAATGCCAATGAACAGGAAAAACCACTGAATGAAAATCAAGATACTAACAAcagtaattttgttaattctCATGCTGAAACTGATAGTGTACAATCTTCAAATTCACAATcaactaaaaattcaaaaacatttgTGCATAACAATCGTGGCGATCGGTATTATGACAGAAAAGGACGATATAATTCTAGAGATCCAAGAGATCCAAGAGATCCGAGAGATTCGAGAGATTCAAGAGATCCGAGAGATTCGAGAGATCCAAGAGATCCGAGAGATTCGAGAGATTCGAGAGATCCGAGAGATTCAAGAGATCCAAGAGATTCTTACAATCCTAGAGATCCACGAGATAGGAGAAGCGAGATATCGGAAAATGGATATggtagaaataattataacagaGAAAACAAGTatgaaaagagagaaaatagaACGACAGAAAACCGGGATAATCGAGATAAAGAGATATCGGAAAATGGATATggtagaaataattataatagagaaaataagtacgaaaagagagaaaatagaACAACAGAGAATCGAGATAATCGAGATAAAGAGATTACAGATTGGAGACAAAGATCAGCAAATGATGTTGGAAATAAAAGTGCTTTGCTTAGACGCGTTTACCATAAAAAATACGAACCTgatgatGCTGCAAGTCAAAGAGAAAGATTGCAAGAGCAACTTAATCGAGGTCAGTTGGAGTGTTTAGTATGCTGCGATTCCATTAGGCAAGCTGATTATGTATGGTCTTGCAAAAATTGCTACCACGTATTGcatttaaaatgtgtaaaaaagtGGGCCACGTCATCTCAAGACGAGAGCGGTTGGCGCTGTCCCGCATGTCAGAATGTCACGGCGGTGGTGCCGCAGGATTACGAGTGCTTCTGCGGTAAGACGAAGGTGCCTGAATGGAATCGTCGTGACATCGCGCACTCGTGTGGCGAGATCTGCGGCCGTTCGCGGCCCGATACCAATTGTACCCACAAGTGTACGCTGCTTTGTCACCCGGGTTCTTGCCCACCTTGCACGGCGATGGTTACCAAGTCGTGTGGCTGCGGCCGAATGTCGCAAACGCAGAAGTGCAGCACTGGGCCTCTTCTTCAGTGTGACGAAATCTGCAACCGCGCCCTCAATTGCGGCGTGCACAAGTGCGTCGAAAAGTGCCACCACGGTAGCTGCGAACCGTGCGACAAGATTGTTAAACAAgAATGCTTCTGTGGAAAGAATAGTCGAGAAGAAACTTGTGTACTAGACTTACCGCCATTGTATTCATGCGAAAATGTTTGTGACAAAGTGTTAGATTGTGGTAATCATAAGTGTAAAGAAATCTGCCATCCGGGTGAATGTGGACCTTGTGTTTTAAAACCAGAGACTGTTACCCATTGTTGCTGTGGGCAGACTCCTTTAACAGTTAAAAGAGAGAGCTGTTTAGATCCAATTCCTACTTGTGATAAAACGTGCGAAAAACGACTAAAATGTGGTCAACCAAgCAATCCTCATACCTGCCAAGCAAACTGCCATGAAGGCGAATGCCCTGAATGCGAGTTGATCACCAAGGTCAAATGCCGCTGTGGTTACATGGACAAGGAGATCCCTTGCAGAGAACTTACAACTAAGGCTGATGACGCACGTTGCGAGaagaaatgtacaaaaaaacgTTCCTGTGGCAAGCACAAATGCAACCAAATGTGTTGTATCGACATTGAACACATGTGCCCTCTACCCTGCTCGAAAACTTTGAGCTGCGGCAGGCACAAATGCGAGCAAACTTGTCATCgaaGCCGATGTCAGCCGTGCTGGCGCAGCAGCTTCGACGAGTTGTATTGCGAGTGTGGCGCAGCGGTGATTTACCCGCCGGTGCCTTGTGGAACTCGGCGCCCGGCCTGCGAGAAGCCGTGTTCTCGCGAACACGCTTGTGACCACGAGGTGCTGCACAACTGCCACAGTAACGCTAACTGCCCACCCTGCACCGTCCTCACGCAGAAATGGTGCTACGGCAAACACGAGCTACGCAAGGCCGTGCCTTGCTACGTCAACGAGGTGTCCTGTGGTTTACCCTGTGGAAAACCCATTTCTTGCGGACGGCATAAGTGTATTACTATCTGCCACCCGGGCCTCTGCGAGAAACCCGGTCAAACTTGCACGCAGCCGTGCACTGTACCTCGTGAGTTGTGCGGGCACATCTGTGGGGCACCTTGCCATGAAGGCAAGTGTCCCGATATACCGTGCAAGGAAATGGTTAagGTTACTTGTCAGTGTGGACACAGATCAATGTCTCGAGTGTGTGCGGAGAACGCCCGAGACTATCAGCGAATTGCTAGTGGAATTTTGGCCAGTAAAATGGTGGACATGCAACTTGGTCATTCGGTTGACTTAGAAGAAGTTTTCGGTCAAGGAGCTAAGAAGCAGAATCAATTGAAAACTCTCGAGTGCAATGACGAGTGTAAAATGATCGAAAGGAACCGTCGACTTGCGCTTGGTTTGCAAATTGTTAACCCTGATCTAAGCGGCAAATTAATGCCCAAGTACAGCGATCATATGAAACAATGGGGTAAAAAAGATCCGATCTTCTGTCAAATGGTGCACGATAAACTAACCGAGCTAGTGCAATTAGCAAAGACTTCCAAGCAGAAATCGCGCAGCTATTCGTTCGATAGTATGAACAGAGACAAAAGGCAATTTGTGCATGAATCATGTGAGCATTTTGGCTGCGAGAGTCAAGCCTACGATCAAGAACCCAAGCGTAACGTTGTCGCGACTGCTGTAAAGGATAAAtgTTGGTTACCAAGTTACAGTTTATTGGAAATATTGCAAAGAGAAAACGGTCAACGAAAAGTTCCAGGACCAATGTTAAACAAGTCCAAACTAAATAGTACTGAAAGAAACGTggatattttacaatttaactcaaaaaagagtttaaaacaACAGCCCACAACTTCTTCGTCTTCGCCAACAAGGTCTCCAGAACCAGAAATagattactttaattataaaggtTGA
Protein Sequence
MATWDGSYPEPDGSNYYVNSDRNAPVNVPAWNYYVPNANNSYPQNPATPYALETSMVFEQSTPNYYNYVDTTIPSLMPNATPNTNAYPSNAIEAVSNKGHMGSSETHANNSNNQAQCFFEDNKALAQQQQTSTYYYNNRSNHHQNKNKRKDVNKSYQVSDIVEHSNLHANATEFIPNQNKYDKTNSVQHQNGKGRGINDYQGHEVNQASNHAFFEDNRARVNDRKFENKRDAGRRWRDNQNGQHHKDDKKDYGRNQNPRRYQNDKYNHNRNYENNRSRNNRSTRDDAESVSSETNANEQEKPLNENQDTNNSNFVNSHAETDSVQSSNSQSTKNSKTFVHNNRGDRYYDRKGRYNSRDPRDPRDPRDSRDSRDPRDSRDPRDPRDSRDSRDPRDSRDPRDSYNPRDPRDRRSEISENGYGRNNYNRENKYEKRENRTTENRDNRDKEISENGYGRNNYNRENKYEKRENRTTENRDNRDKEITDWRQRSANDVGNKSALLRRVYHKKYEPDDAASQRERLQEQLNRGQLECLVCCDSIRQADYVWSCKNCYHVLHLKCVKKWATSSQDESGWRCPACQNVTAVVPQDYECFCGKTKVPEWNRRDIAHSCGEICGRSRPDTNCTHKCTLLCHPGSCPPCTAMVTKSCGCGRMSQTQKCSTGPLLQCDEICNRALNCGVHKCVEKCHHGSCEPCDKIVKQECFCGKNSREETCVLDLPPLYSCENVCDKVLDCGNHKCKEICHPGECGPCVLKPETVTHCCCGQTPLTVKRESCLDPIPTCDKTCEKRLKCGQPSNPHTCQANCHEGECPECELITKVKCRCGYMDKEIPCRELTTKADDARCEKKCTKKRSCGKHKCNQMCCIDIEHMCPLPCSKTLSCGRHKCEQTCHRSRCQPCWRSSFDELYCECGAAVIYPPVPCGTRRPACEKPCSREHACDHEVLHNCHSNANCPPCTVLTQKWCYGKHELRKAVPCYVNEVSCGLPCGKPISCGRHKCITICHPGLCEKPGQTCTQPCTVPRELCGHICGAPCHEGKCPDIPCKEMVKVTCQCGHRSMSRVCAENARDYQRIASGILASKMVDMQLGHSVDLEEVFGQGAKKQNQLKTLECNDECKMIERNRRLALGLQIVNPDLSGKLMPKYSDHMKQWGKKDPIFCQMVHDKLTELVQLAKTSKQKSRSYSFDSMNRDKRQFVHESCEHFGCESQAYDQEPKRNVVATAVKDKCWLPSYSLLEILQRENGQRKVPGPMLNKSKLNSTERNVDILQFNSKKSLKQQPTTSSSSPTRSPEPEIDYFNYKG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01113884;
80% Identity
-