Olab006411.1
Basic Information
- Insect
- Ormyrus labotus
- Gene Symbol
- -
- Assembly
- GCA_035582975.1
- Location
- JAWWEO010000021.1:23163075-23164977[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0047 0.5 11.6 2.0 1 23 73 95 73 96 0.96 2 12 3.4e-05 0.0036 18.4 4.3 1 23 102 124 102 124 0.98 3 12 6e-05 0.0063 17.6 8.1 1 23 151 173 151 173 0.95 4 12 0.00016 0.017 16.2 4.8 2 23 179 200 178 200 0.97 5 12 0.006 0.63 11.3 0.3 1 23 205 227 205 227 0.97 6 12 7.1e-07 7.4e-05 23.7 1.4 1 23 235 257 235 257 0.98 7 12 0.39 41 5.6 2.3 1 23 263 286 263 286 0.94 8 12 0.00013 0.014 16.5 0.3 3 23 299 319 297 319 0.96 9 12 3.8e-06 0.0004 21.4 2.0 1 23 325 347 325 347 0.96 10 12 1.9e-08 2e-06 28.6 0.2 1 23 353 375 353 375 0.98 11 12 1.5e-07 1.5e-05 25.8 0.9 1 23 381 403 381 403 0.98 12 12 0.00034 0.036 15.2 1.7 1 21 409 429 409 430 0.96
Sequence Information
- Coding Sequence
- ATGGGATTTAAAGATAAAGCACATATatTCGCCTACCCCCAGCGTTATTACCCTATGACGGTCTTGGCAGGGGAAAATAACTACAAGCGGCCCTCTTCGCCCGCCGTAATCACGAAGAAGAAGCAACAAATGAAAAAGCTCGAGTCGGAGCTGGTCGTCGTCAAGGTTGAGGAGGACCACAGCGAATCGTTTCTTAACGAGGACACGCCTCTGTCCTACCATTGCAATCTTTGCAACATCTACTTTGCCAAGCAGCCCTTGCTGGACATGCACATTATGATGCACCACAAGGTAAAGAATAAGTACGACTGCGCACACTGCGGCAGGAGCTGCCGCACGGCTTTGAGCCTTCGCCAGCACATGAAGCGCCATAACAACGTCATTGTTACGCGCTCGAAAAAGACTGAGGAGGAAATTCAGTCGGAGGAGGAgcctcagcagcagcagaactTTCTGTGCAAGACCTGCGGCAAAACATTCCATCACAAAAGTAATTATCAAAAACATCTGTCGCGGCACATTGCTGGCGACCTCACTTGCAAGCACTGCCCGAAGAAGTTCCGTCTCTTCCGCGACTTGACGCGACACGAGAAAACACACTTCCTTCCGAGCTACGCCTGTAAGGAGTGCGAATACGAAACTACAGTCTTAGCTGCTCTACATATACATATGACCAGGCACACGGACAAAGGCGAGCTGCCCTTCAAGTGCAACGAATGCGACAAGCGATTTAGAAAAGCGACAGAGCTTCAGGAGCACTACAACATTCATTCGGGCGATAAACCCTTCGTCTGCCAGACCTGTTCAGCCGCTTTCTTCCTGAGAAGGCAGCTATCGGCACACTGCCGACGCTTGCACCCTGAACTGAAGGCGCAAAAAGTAACCAGTACCGCGTGCGACATTTGCGGCAGGGTATTAGCTACAAAAAGGTCCTTATTCAGACATAAAGAGAGTCACAATCCGACGAAGCTCTACCTCTGCGATTTTTGCGGAAAGAGCCTCAGCAGTGCGGAGCACCTGAAAAAGCACCGAAGAATTCACACCGGCGAAAAGCCGTACGTCTGCGATATATGCGGAAAGGGATTTACGGATTCCGAAAATCTCAGAATGCACAGGCGAGTGCACACCGGGGAAAAGCCGTATAAGTGCGATCAATGCCCGAAGGCGTTCAGTCAACGATCGACCCTCACCATTCATAGGAGAGCTCATACCGGGGAGCGGCCATATGTATGCCAGATTTGCCACAGGGGATTTTCGTGCCAGGGCAACTTGACTGCCCATCAAAAATCTACTTGTGTGTAG
- Protein Sequence
- MGFKDKAHIFAYPQRYYPMTVLAGENNYKRPSSPAVITKKKQQMKKLESELVVVKVEEDHSESFLNEDTPLSYHCNLCNIYFAKQPLLDMHIMMHHKVKNKYDCAHCGRSCRTALSLRQHMKRHNNVIVTRSKKTEEEIQSEEEPQQQQNFLCKTCGKTFHHKSNYQKHLSRHIAGDLTCKHCPKKFRLFRDLTRHEKTHFLPSYACKECEYETTVLAALHIHMTRHTDKGELPFKCNECDKRFRKATELQEHYNIHSGDKPFVCQTCSAAFFLRRQLSAHCRRLHPELKAQKVTSTACDICGRVLATKRSLFRHKESHNPTKLYLCDFCGKSLSSAEHLKKHRRIHTGEKPYVCDICGKGFTDSENLRMHRRVHTGEKPYKCDQCPKAFSQRSTLTIHRRAHTGERPYVCQICHRGFSCQGNLTAHQKSTCV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01112032;
- 90% Identity
- iTF_01112032;
- 80% Identity
- -