Olab011568.1
Basic Information
- Insect
- Ormyrus labotus
- Gene Symbol
- -
- Assembly
- GCA_035582975.1
- Location
- JAWWEO010000800.1:3035-3705[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 6.7e-09 1.1e-05 25.7 0.0 2 41 16 55 15 59 0.90 2 3 5.2 8.4e+03 -2.7 0.0 19 26 91 98 91 98 0.87 3 3 1.6 2.7e+03 -1.1 0.1 15 23 152 160 147 161 0.81
Sequence Information
- Coding Sequence
- atggTCCTAAACTACAAACGGAAATCAGAAAGGGCGAAAATACCTCGTGACATAATATTGCAGGCTATAAAACAAGTGAAACACGGAAAAacgtcaattaaaaaagtagcaGCCTACTTTGGAATACCTTCCAGAAGTCTCGCGAGATACTGCTCGTCACACTCTCAAGTGGAACTTGGAAATGCAGAAGGAGTATCAAGTATATCATTTGGATATAAAAGACCCAAACagataTTCACAGATGAACAAGAAAAACATCTTGAagcatatattaaaaaagcctCTGACATATATTTAGGCTTATCACcgaaagaaataagaaaactgACTTACGATTATGCTAATTCTTTTGATCTCGACGTGCCAGTTTCTtggatagaaaataaaatggcAGGTACAGATTGGTTTGCTTCCTTCTTAAAACGACATTCCAGTCTCTCAATTCGAGCTCCGGGAGCAACTAGCTTAGCAAGAGCATCAGCATTTAATTCCAACAATGTCAATATGTTGTAA
- Protein Sequence
- MVLNYKRKSERAKIPRDIILQAIKQVKHGKTSIKKVAAYFGIPSRSLARYCSSHSQVELGNAEGVSSISFGYKRPKQIFTDEQEKHLEAYIKKASDIYLGLSPKEIRKLTYDYANSFDLDVPVSWIENKMAGTDWFASFLKRHSSLSIRAPGATSLARASAFNSNNVNML
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -