Ooch002937.2
Basic Information
- Insect
- Ormia ochracea
- Gene Symbol
- -
- Assembly
- GCA_963402855.1
- Location
- OY727105.1:52465028-52473947[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.048 2.8 8.6 0.7 1 23 1652 1675 1652 1675 0.94 2 12 1.8 1e+02 3.7 1.0 1 23 1838 1860 1838 1860 0.93 3 12 0.00068 0.039 14.5 2.8 2 23 1863 1884 1863 1884 0.97 4 12 3.3e-05 0.0019 18.6 0.2 3 23 1892 1912 1890 1912 0.98 5 12 6.7e-06 0.00039 20.8 5.8 2 23 1919 1940 1918 1940 0.97 6 12 7.6 4.4e+02 1.7 0.1 5 23 1953 1971 1952 1971 0.96 7 12 0.15 8.7 7.1 0.1 2 23 2010 2030 2009 2030 0.96 8 12 8e-05 0.0046 17.4 0.4 1 19 2036 2054 2036 2058 0.95 9 12 4.6e-06 0.00026 21.3 1.8 1 23 2066 2088 2066 2088 0.99 10 12 0.00016 0.0092 16.4 6.5 1 23 2094 2116 2094 2117 0.96 11 12 0.00096 0.055 14.0 6.4 1 23 2122 2144 2122 2144 0.99 12 12 0.0026 0.15 12.6 5.8 1 23 2150 2172 2150 2173 0.96
Sequence Information
- Coding Sequence
- atggcAGAAAATGTCCAATGCCCCGTATGTACTTTATACCTGCACGCAGGTATGAATCTGTCAGATCATTTGGAGACGCATCCAAAAGAACAAGTTATTCGTGCTCTAGTAAAAATGACTATATCTGGAATAGGAGGTGGAAATAGCAATAGCAATAGCAGCACATTAGCCTCTGCTGGAGAAGAGGCTGGAGAAGACGGAAAAGGTAACGCTTCCAAAAAGCAATCATCTGATTTAGAAGAAAAGTCTCTATCAAATATCAAGGACAATGAATTTGACGTGGCTATTACAGGAAATAACTGTGGTGCCACTTCAAAAAGTTCAACCAGCAATTGTTCATTGCCAAACCAAAGTGTTAGCAGTAACCAAAATGCAAGCCACGTATTGAATGTTTCTGATACAAAAATTGAACGTCATAACGAAAATGAACGGGACAAAATATTAACTTCTGCATCTACTGCCACAATTAATACAGTGATTAAAGAGGAAACAATCAATAAAATTGCACTTGCAAAAGACAATATTGATCAAAGCTTCCCGAAACAAAATTTAGAGCCAgcaagtttaattaataactcaACCGCTACTAATGCAAgtcattcatataaaaattcagtaGAGTTGCCAAATACAACAAACGTTCATCACAATGTAAACGTTTTTGGAGGTAATACTCGTTATGACCAACAACAGCGTAATGGTGGTAATCAAAATGCAATATCTACCCTGCTACACATGCCACCACCGCCACCTCCAGCATCTCCACAAAGTCATCATCCCAGTCAGTTTCAAGACACAAGTCGCCCAATTATACCAGTCGGAGGCAATGGGTCATTTACTGCAATACAGCCACAACATTTGCCGCCACCAGCCCCACCTCATAATAATTCCCTTCATTTGGCCAATTCAACCACTAGTTCGCGCCAGCCTCATCTCTATACTGCAGCCTCACTTTTACAGCCACCAACAAATACTCATCATGCACAAAGTTTAAAGGTTATATATACACCAAGTTTGCCACCACCACCTCCGCTGCAGctCTTCACTTATCAACCGCAATCAAATGTGCAGCAACATCAAAAACCCCCACCGGCCTATGGGGCTGCAATAAGTCAAATTCGATCTCAGCATCACCTAAATAAGCATCAACATCAACAATTGGTGCAGCAACAACCGCATTTGCAGCAACACCAAACGTTGCAACATAATTTAAGAATACAAGTACCACCGCCGCCACCTCCACCTCCAATTTCaacaaaacatacatattcgGCTAAAACCAATGATTTGTTGAATCATTCAACTTCCAGGCTTAGTCAGTTGCAACTACATCAGCAACAAAGCAAAGCAGATTTGtcacaacagcagcagcaggaAGACCAACAACAGCAGGGCAACATACAAAACTCAAGTATCTTAAACAATGAAGTGTTCGATTTGCAAGaacattcaaataaatcttCCATAAAGGATATATCTCCAGTTACTTTACACAATTCAACTGTGAATGCCTCTCCATATCCACAAGTTTCAATTAGTCCTTCTACTTCATCGTCATCAATAGTACCTGTGACTCCATCTACGTTGGGATCATTGGGAAGACATACAAACCCCCCTTTTGCCGCATTATTAGCAGCAGCTGCTGGCGCTCCATCACCATCAAATACTTCTTCAGTGTTAAGATACGCAGAGTCGCCAGTGGCTCATTATTTAGAAAGAGAAAATGGTGATTTTATTGTACAAGAAACTCCCAAACATATTGTAGAATGTGTTGAAACAGACAATGGAGAATTCTCTGTCATTGAACGTATATATCAATCACCTCCTAGTGTTTTACATATACATgacgatgatgacgatgacgatggtAATGATATAAGCAAAGAACGAATGGAAGATGAACAGAGAGAACAGGGTGATATCAAGCCTAAACAGCATGATGTTATTGATGGTGAAGGTGGAAAACTTAAAGATGAATGGgttgaaaaacaaagaaaaacttcgCAGAAAAcagttaaaaccaaaaagaTGAAAAGGAAAGCTAAACTTGGAGGGGAAACTTCTGTTAACAGTGATATAGTGGATTTTGTAAGTATTTCTAGTGACAGCGGAGATGAAGAAGAATTTATATTCCAAGAATGTATGAGCAATAATAGTACCACCGAAAAGAAGAGAAAGAATCTCTCCTCCTCCACTTGTGGCCTTTCAATGTCAACAACGTCTACACAGTCTTCATCCGTATCGCCTCCACTAGCAGCAGCAATATGTGATGATCCACCAATTTCAACAACATCAAATTCATTGGATAGTTCGTCATCTTCCTTAGCAACGTCAAGTAATACCTCTACGCAACATAATTTCGGAGTGACCACTAATGGCACCATCGCTAGTCGAAAAAAATCATCTAAGAACACAATCACAGTTTTAAGTGATgtccaattaaatttaaacgaatATTTAGACTTAGTTGGAAACATATTTGCTTCGAGCAAAGTAGCAGCACAgcgtaaaacattttcatctaTTGCTCCCATACCTCTggtaaaaatcgaaaaagagGAACCTATGGATGAATATATGGCAACAAACATAACATCTGCAGCAacattaccaaattttaaaactgtacCACCTTTGAAGGCCAAGAAACATGAGACTGAAGAAATAACTGATATCCCTAGCAGTAGTcatagtaaacaaaaaacaaataatataacttTAACAAAAGAACCAGAACCAGAGGAAGTAGAAGAGAAAAAACCACAACTCTTCATAAATACATCGGTGAATGAAACCACATCTATTGGAGTTTCAAATGCATCCACTGGCCTTATGACGGTAAATTCCAGTCAAGTTACCAGTGTTATACGTATGGCCACAACTAGTCAACACCAGCAACAAGagaatttgcaaaattgtttggaaagcattaaaaattcaaatgaggCACAGGATTTATCACGATCGCAACAGAAAGTTCAATcaccaataaatataaaaacaacggCCCATACACCGTTAACTCGTAAAGGTCccaaaaaattagttattaagCCTAAATCTACAAAGACTGAAGTTTTGTCAACCTCAACTATGGCAAGCGAACCAAACCAAAAGCGAACAGATAATGATAAAGAATTTCCGACTACTTCTGCTAAGGCtctgcaagaaaataaaaaagaacctTCCCTGCGGGAGGTGCCGCTTACCACAACagatgtaaaagtaaaaaatgaaccCTTAAGCTTTGAAAATCTTCATCAGCAACCGCAATGCCACCCAACCCCAAGCTTCAGTATCTTGGAGCAGCATCTAAGTTCAAAAGAACCCATTCTGGAGTTTAAAGAGGAAAAGCCCTGCATAACAGAAACTAGTATACCGCCAACGTCAATCATCAAGGAAATGAAGCTAGAGAACAATGTGAATGATGATGCGCGGGTTTTATACGACTTTGCCAATTCCAAGAAAACGAAAAGTGAAGCGCCATCAACCTTCCCATCTTCCACATCGCTTTTCTCAAGCAAGCAAAGTAATATAGAAATAACATTATTTGAAGAGCCGCAAACGCAGCCACTCAGTAAAAGCATTAGTAATGATAATGAGTCATCAATGTCATCGTCGTCAACATATTCTTCGCAATCTGTTACAGACGTTCCCATGCCACCTGAAGACCAAAATGAAAGTTCAACTACAAATACGTCGGTTGCAACAAACAATCAAACTAACCATCAAAATAATCAGACTTATACCgattttcactttaattatCTTTATAATCAAGGCGGAAACAATGTAGTTCCAGTTCAAACTGAACAAGTAGATATTAAGAATGATCAGCAATTTTcctcattttatcaaaattctaCTAACAACAATAATGCTTTGTTATTAGAAGATTCATCTTCTAGCAAACCATATACAGACTATCAGCAATTCCCAAGTAATCATCTACATATGCATCAACATCAGGTTGCTGCAACGTCGCATGAGCAATGGTTTAACAATCATTACACGACATCAGAACCTAACGTTACACAAATTACTTCAAACCATTCAAATTCTAACATGAACAGTGGGTTGTCCGTTGATGTTAATTCGCCGGGGTTAGATGGAAGTGAATCAGGTAAATATTTAGACTTGGATTCATGCAAACGCGAGCAAAACATTGATATTAATGTTGGTGTACGAGGCACTGTACCAGCACCGCCTCCACCATCCTCCTCGACTTCGTGTTCGTTTAATGGAACAACCGACAATAGTATGGCTGGCATCTGTTCGACTGCAGCCACTTTGAATATGCGAACAGATGAGAAAATGCCAGCTAAAGGTGAAATTTCGGAACAGGAAAGCAACTGCGATATTGATAATTCATGGAGTCAGCCgatGTATGGTGATATTTCGGCCCGTTTCTTTAAGACATTTCCCGCAATTTTTCCTCAAGACAACGGTTGGAATCACGAAGAATATTTTGCTGTACAAGATTTAAGTGCATCAACAACTGGGCAAGCCACTAACAGTACTAATAGTAGAATGAAAagctTTGAGCAAACTAGTAGCAGCAATATCACTAGTATCAGTATGCCAATATTttcgcaaaatttaaatgacaatTGCAATATGGATGTCATGCCATCAACTTCAGCTAAAATACGTAAGAGACGTAAGCATAGCACTCAAGATGGGAAGATACCACAAGCTAGTAGTAAGCGTATTCAGCCAACATCGACTGTAACATCTCAACATATGTTATTGCAACATCAAAATGAATTACCAGGAGTTGAGTTTAATTTCCAACATCATCAACAGATGAatttgcaacaacaacatttgcaGCAACCAAGCACATCTACAGCCTACTTGGCAGGAACGTCAAATGTTAGTACTGATTTGCCAAATGATTTTGgtgcacaacaacaacaacagcaaacaaaTCCAAAACAACgcacaaaagtttatgaatgCGGTCATTGCAATGCGAAGTATTCGAAACTGAAAGATCGTAATGCGCACATGATTGATGTTCATAATTACGTACGACAAAATAGAAGATTAGTGTGCCCCGCGACTGGTCTTGCCACACCCTTAAGTAATTCTGATATGCAAGATGTGGCTGTTCCCACAACAAGTGCAGCTAGTAGCGGTTTGATGCCTGCATTACTAAATGTCGACTGTGTCGATGACTGTAAACAGGCAAttgtaaaaatagaaaatgaaaatcctCAACGTGATCCGCCTATCGTTGAACCGATCAGTGCCAATTTAAGTGCTAAAACTGAAGTTATAGAGGACCATAAGCAAAACTTGGGTCTAGTAGCCTTGACTTCAGTAAATGCTGAAACAACTATTGAATATGATACGAAACCAATTACTACCAGTCTACCACTCTCGCTGACGACTTCCAGCAGTAAATTAACCACATTGTATCGCATTCTGGTGTCGTTTAACATGacaactttaaaacaaaaccaaaacctTTCGGAATTTGATGAGAATCTTATAAAatcatcaatatttttttgctatatttGTCGGCAGAATTTTAATTCAGTAAAATTGTATGATGCTCATTTGACAGAACATCCTGCTGAGTGCTTTACATGCGGAAAAAAATTCCAGCGATGGAAGAATTTCTCATTACACTTGAAGCGACATTTAGGTTGGAAGGAATTTGGTTGTACCgtatgtgataaaaaatttgtagtaCGAAGTGCTCTCGTTGAACACATGCGCATGCATTCCGGATTATCTCCgttaaaatgtaaagtttgtgGTAAACACTTCAAGCGTTATTCGAACTTAACTCAACATCGTAAGCGtcatacaaaacaaattataagacGGAAAGAGTACGTTTGTTATTGTGGAGAAGTTTTACCATCTAAAGCACGTTTCTTATGGCATAAGGAAACTCATGATTCAAAACCGAAATGTTGCCCACATTGCTGTGACCGTTTTGTCCATGTAAACTCTTTGCGGCGACACATTCGTCTCGCTCATTCAGATAAATTCGACTATACCGAACCGATGGAGTGTTCAGTATGCAAGCAAATATTCGCTAAGGCGTCAATGAAAGCTCATATGGCGACGCATTCCACAGAAACGCAATATGATTGTgctatttgcaataaatccttttcaacaaaatggaacttaaaaatacattcctGGGTACATGCAAATCGCACAGCTAAACCCTTCAAATGTGAACACTGCCCAAAGGCATTTGTGCGCGAAGTTGATTTCAAGAATCATATGAATTCCCACAAACAAATCAAACCATACACATGTGAGGTATGTGGTTGTAAGTTTattcgaaaatataattacatgCGGCATAGAAGGGAGCACCatggaaacaaaaagtatACCTGTGATCTATGTAAAAAGTCGTTCCATCGCCATTACTATCTAATCGAGCACAGACGCATTCACACTGGTGAACGACCTTTTCAATGCTCGATATGTGGTAAAAGTTCAACAACCAAAACTAATcataacaaacatttaaaaattcatcattcACGTGATCCTTACACCGTGGAGGCTTAA
- Protein Sequence
- MAENVQCPVCTLYLHAGMNLSDHLETHPKEQVIRALVKMTISGIGGGNSNSNSSTLASAGEEAGEDGKGNASKKQSSDLEEKSLSNIKDNEFDVAITGNNCGATSKSSTSNCSLPNQSVSSNQNASHVLNVSDTKIERHNENERDKILTSASTATINTVIKEETINKIALAKDNIDQSFPKQNLEPASLINNSTATNASHSYKNSVELPNTTNVHHNVNVFGGNTRYDQQQRNGGNQNAISTLLHMPPPPPPASPQSHHPSQFQDTSRPIIPVGGNGSFTAIQPQHLPPPAPPHNNSLHLANSTTSSRQPHLYTAASLLQPPTNTHHAQSLKVIYTPSLPPPPPLQLFTYQPQSNVQQHQKPPPAYGAAISQIRSQHHLNKHQHQQLVQQQPHLQQHQTLQHNLRIQVPPPPPPPPISTKHTYSAKTNDLLNHSTSRLSQLQLHQQQSKADLSQQQQQEDQQQQGNIQNSSILNNEVFDLQEHSNKSSIKDISPVTLHNSTVNASPYPQVSISPSTSSSSIVPVTPSTLGSLGRHTNPPFAALLAAAAGAPSPSNTSSVLRYAESPVAHYLERENGDFIVQETPKHIVECVETDNGEFSVIERIYQSPPSVLHIHDDDDDDDGNDISKERMEDEQREQGDIKPKQHDVIDGEGGKLKDEWVEKQRKTSQKTVKTKKMKRKAKLGGETSVNSDIVDFVSISSDSGDEEEFIFQECMSNNSTTEKKRKNLSSSTCGLSMSTTSTQSSSVSPPLAAAICDDPPISTTSNSLDSSSSSLATSSNTSTQHNFGVTTNGTIASRKKSSKNTITVLSDVQLNLNEYLDLVGNIFASSKVAAQRKTFSSIAPIPLVKIEKEEPMDEYMATNITSAATLPNFKTVPPLKAKKHETEEITDIPSSSHSKQKTNNITLTKEPEPEEVEEKKPQLFINTSVNETTSIGVSNASTGLMTVNSSQVTSVIRMATTSQHQQQENLQNCLESIKNSNEAQDLSRSQQKVQSPINIKTTAHTPLTRKGPKKLVIKPKSTKTEVLSTSTMASEPNQKRTDNDKEFPTTSAKALQENKKEPSLREVPLTTTDVKVKNEPLSFENLHQQPQCHPTPSFSILEQHLSSKEPILEFKEEKPCITETSIPPTSIIKEMKLENNVNDDARVLYDFANSKKTKSEAPSTFPSSTSLFSSKQSNIEITLFEEPQTQPLSKSISNDNESSMSSSSTYSSQSVTDVPMPPEDQNESSTTNTSVATNNQTNHQNNQTYTDFHFNYLYNQGGNNVVPVQTEQVDIKNDQQFSSFYQNSTNNNNALLLEDSSSSKPYTDYQQFPSNHLHMHQHQVAATSHEQWFNNHYTTSEPNVTQITSNHSNSNMNSGLSVDVNSPGLDGSESGKYLDLDSCKREQNIDINVGVRGTVPAPPPPSSSTSCSFNGTTDNSMAGICSTAATLNMRTDEKMPAKGEISEQESNCDIDNSWSQPMYGDISARFFKTFPAIFPQDNGWNHEEYFAVQDLSASTTGQATNSTNSRMKSFEQTSSSNITSISMPIFSQNLNDNCNMDVMPSTSAKIRKRRKHSTQDGKIPQASSKRIQPTSTVTSQHMLLQHQNELPGVEFNFQHHQQMNLQQQHLQQPSTSTAYLAGTSNVSTDLPNDFGAQQQQQQTNPKQRTKVYECGHCNAKYSKLKDRNAHMIDVHNYVRQNRRLVCPATGLATPLSNSDMQDVAVPTTSAASSGLMPALLNVDCVDDCKQAIVKIENENPQRDPPIVEPISANLSAKTEVIEDHKQNLGLVALTSVNAETTIEYDTKPITTSLPLSLTTSSSKLTTLYRILVSFNMTTLKQNQNLSEFDENLIKSSIFFCYICRQNFNSVKLYDAHLTEHPAECFTCGKKFQRWKNFSLHLKRHLGWKEFGCTVCDKKFVVRSALVEHMRMHSGLSPLKCKVCGKHFKRYSNLTQHRKRHTKQIIRRKEYVCYCGEVLPSKARFLWHKETHDSKPKCCPHCCDRFVHVNSLRRHIRLAHSDKFDYTEPMECSVCKQIFAKASMKAHMATHSTETQYDCAICNKSFSTKWNLKIHSWVHANRTAKPFKCEHCPKAFVREVDFKNHMNSHKQIKPYTCEVCGCKFIRKYNYMRHRREHHGNKKYTCDLCKKSFHRHYYLIEHRRIHTGERPFQCSICGKSSTTKTNHNKHLKIHHSRDPYTVEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -