Basic Information

Insect: Ormia ochracea
Gene Symbol: -
Assembly: GCA_963402855.1
Location: OY727108.1:5096928-5099142[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00077 0.045 14.3 2.6 1 23 347 370 347 370 0.97

2 8 6.7e-06 0.00039 20.8 2.8 2 23 386 407 386 407 0.97

3 8 0.0002 0.012 16.1 0.2 2 23 417 439 416 440 0.93

4 8 0.00014 0.0082 16.6 0.3 1 23 445 467 445 467 0.98

5 8 0.00026 0.015 15.8 3.7 1 23 473 495 473 495 0.98

6 8 5.4e-05 0.0031 17.9 0.4 1 23 500 522 500 522 0.98

7 8 2.4e-05 0.0014 19.1 0.7 1 23 528 550 528 550 0.97

8 8 0.0015 0.088 13.4 5.6 1 23 556 579 556 579 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00077	0.045	14.3	2.6	1	23	347	370	347	370	0.97
2	8	6.7e-06	0.00039	20.8	2.8	2	23	386	407	386	407	0.97
3	8	0.0002	0.012	16.1	0.2	2	23	417	439	416	440	0.93
4	8	0.00014	0.0082	16.6	0.3	1	23	445	467	445	467	0.98
5	8	0.00026	0.015	15.8	3.7	1	23	473	495	473	495	0.98
6	8	5.4e-05	0.0031	17.9	0.4	1	23	500	522	500	522	0.98
7	8	2.4e-05	0.0014	19.1	0.7	1	23	528	550	528	550	0.97
8	8	0.0015	0.088	13.4	5.6	1	23	556	579	556	579	0.97

Sequence Information

Coding Sequence: atgcagaATGTGTCAAAAGAGTGTGTTAACACAAATTGGTTAAGGTGGTGTCGATTGTGTGCCAAGCGTGAAGACAATGGcagaaaaaatgaatcaatCTTTGTTAAAaacgcagctggaaaatatgaatCTGAATTGGCTACATCAATTGGAAAATACTTTTGGGTTAACATAAAACCCAATGATTTGTTATCCCAATGCTTGTGCTCCGAATGCAAGCAGCTTGTACAGGAATTAGTCGCATTTACAGAGCGTATCAATAAGGTCCAAACTTTATTCTGCTTACTACAAAATAGGGATCCTACTACGGCTGAACAATATGACCGTTTGCGTATACAATGTGGCCTCGTGGACGATGGATGGAAACATTTAATTAGAACTGAGTCTCCCGCGTTGGTGGGACCTGAAAAAGTTATCTTAATTGATAAGGagatacaaacaaattttgaatgCTTTCAGGACAGTGAGATAGAAAATCAGAAGATTATTGAAACATCCGTAGAGGCAgaagatataataaatatgttacaAAAACCCGATATAGAAGTGGATGCTGAAAGCGAACATGAAATTGTGGCAGAAAATGTCTATGAATATGTTGTGCACAGCGAAACCGATGTGGAGTTTTTTGAAGGTGAGGAATATGTAGTGCCTGCCAGTAACGACCAACACGAAGATCAGGAATTCATACCAGAGTCCGCTGGTGTCGAGACTGTTGTACATGATagtgatatttttaaagaactcCAATTCCAAACCACAAACGAAGGAAAAGATGAAGATAACCAAgcagaaatttttgaaatcattGCAAAAGATGAGATGGATTATGAGGAGTCCTCGCCATCTGCACAACAATACGACGATGAAGACGAAGAGGAAATTGAAGTGCTGGATGAGGACGACGGTGAAGAAGACTATATCGTAACTGTTGATGGTCAGGCAGAAGCGAATGCCACGGAATTAGCATTGCAGAAAGTTAAAAGGGGTCGTCCCTTTGGTGCAAAGAATTCCGAAACAGAAACTTCTCTCTACCGCTTTGAGTGCAAAGAGTGTAAACGTACATACAAGAGTTCTACCATTTTTCGCCGACACATGCTTTCGTTGCATAATATTTCTGTTGATGATTTGCCCGAGTTTAAATCTAAATCAAACACTTGTGCCATTtgcaataaacaatttgtaacTCGCAGTAGCTTAAAGATACACATGAGACATCACTTGCCACATGAGGAGAAATACAATGTGCCTTGCCCTTACTGCGGTCGAAAATTTTCACAAGTGGGCGCCATGCGTCAGCATGTAAATGGCATACATCATCAAATAAAACCGTATATATGTGACCAATGTGGTCGTGCGTGTAAAACAATGGGGGCTTTAAACGAACATCAGTTAGTGCATACCAATGAGTGCCCATTCGAATGCGAAGTGTgtcataaaagttttaaaaataaagctcGACTTAAATTTCATATGGATACACACAACAAATCGTTTTATAAATGTCCAGATTGCGGgttgaatttaaatacaaaaagaacCTTAATGCAACATAGACTCGTGCATAGTGATGTTAAACGTTTTAAGTGTGAATTTTGCGATGCAGCTTTCAAAAGATCGAAAGCTCTGAAAACCCACTTGATTTTGCATTCTGGCTTGAGACCTTACAAATGCAATTTCTGTGATAAATCATTTTCCAACGGTTCAAATTGCAGAGCTCACAAGAAACGTACACATCCCAGAGAATTGGCAGAAGGGGAAGCTAATGGTATTGAACCAGAACGAGCTCCTATACCAAAAATGGAAGAATTAAAATCTGCgaaaGGAATTTTAGTACAGCCGCGAAAAATGAAACGGCATGCCGGTGGCTTACCACACCGATTGCGTAAACTTTTGTCAGCCGAGAAATGTAGTGAAGAAAATTCAAACGATTGTGGCGACTCTGCTGAAAACTACGAATCTTTATCAGGTTTTCattatgaaatttcaaaatcggAAGAGTATGAGTCACAATCAGTAGTTGAAAATACAACTGAGCAATGCGAAGAAACTGTAATATATGAAATCATTgacgaaatttaa
Protein Sequence: MQNVSKECVNTNWLRWCRLCAKREDNGRKNESIFVKNAAGKYESELATSIGKYFWVNIKPNDLLSQCLCSECKQLVQELVAFTERINKVQTLFCLLQNRDPTTAEQYDRLRIQCGLVDDGWKHLIRTESPALVGPEKVILIDKEIQTNFECFQDSEIENQKIIETSVEAEDIINMLQKPDIEVDAESEHEIVAENVYEYVVHSETDVEFFEGEEYVVPASNDQHEDQEFIPESAGVETVVHDSDIFKELQFQTTNEGKDEDNQAEIFEIIAKDEMDYEESSPSAQQYDDEDEEEIEVLDEDDGEEDYIVTVDGQAEANATELALQKVKRGRPFGAKNSETETSLYRFECKECKRTYKSSTIFRRHMLSLHNISVDDLPEFKSKSNTCAICNKQFVTRSSLKIHMRHHLPHEEKYNVPCPYCGRKFSQVGAMRQHVNGIHHQIKPYICDQCGRACKTMGALNEHQLVHTNECPFECEVCHKSFKNKARLKFHMDTHNKSFYKCPDCGLNLNTKRTLMQHRLVHSDVKRFKCEFCDAAFKRSKALKTHLILHSGLRPYKCNFCDKSFSNGSNCRAHKKRTHPRELAEGEANGIEPERAPIPKMEELKSAKGILVQPRKMKRHAGGLPHRLRKLLSAEKCSEENSNDCGDSAENYESLSGFHYEISKSEEYESQSVVENTTEQCEETVIYEIIDEI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -