Ooch009515.1
Basic Information
- Insect
- Ormia ochracea
- Gene Symbol
- -
- Assembly
- GCA_963402855.1
- Location
- OY727107.1:44215200-44223150[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.082 4.7 7.9 0.1 2 23 227 249 226 249 0.90 2 10 1.5 87 3.9 0.0 6 23 258 275 258 275 0.96 3 10 0.00068 0.039 14.5 0.4 1 23 281 304 281 304 0.96 4 10 0.00089 0.051 14.1 4.8 1 23 314 336 314 336 0.99 5 10 2.4e-05 0.0014 19.0 3.6 2 23 343 365 342 365 0.94 6 10 7.4e-05 0.0043 17.5 3.4 1 23 371 393 371 393 0.94 7 10 0.22 13 6.6 0.5 2 23 402 423 401 423 0.96 8 10 9.1e-05 0.0053 17.2 0.9 2 23 429 451 428 451 0.89 9 10 1.5e-05 0.00086 19.7 0.4 2 23 458 479 457 479 0.96 10 10 6.1e-06 0.00035 20.9 1.8 1 23 485 508 485 508 0.98
Sequence Information
- Coding Sequence
- atgatTTGTCGTTTATGTTTAAAGGACATTCCAAATGAATCCTGGATTAAGTTATACGAAAATTTTAACCCACCGTCGGAGTGCTTAGAGATGGTTAaacttattaacaaatatCTTGAAATTGATATTAAACATAACGATATTGTATCCACTGTCATTTGCCAAGATTGTTATGATCATCTAGAAGAGTTTCACCGATTTTCGCAACAAGTAGCGGAAAAGCAATTATCACTTCGTAATGAATTTTTGGatgtaaacttaaaaaaagaatttaattttgaagatAGTTGGGGCAATGATGAACGTGAAGATAAATTACCAATGGAGCCAGTGCTTTCTACGCATGGAATTGTCGATAGCTGtgcaataaatatgtttaaaaatgaatcaGACAATGATGACAAGGATGAACAGGAGATTCCAACAGaagatttatttgaaaatgtaagtaaCGAAAAGGATATCATAGCCCCGGACAGTGTGACGATAAATTTGGAATCAAACATACAAGATGAAATATCTTCAGATGGTGATGATGATATTCCATTAATTAAGTTGAAAACTGCAGCAAGACCAAGCCGGAAACAGAAAGTAAAAAACCACAGTACGCcgcaagaaaaaaaaccagcaaaaaaaaagttatctgCAGAAAAGGAAGTGGCGATGTTGATGGAACTGATATGTGAACTTTGCCAAACTCGTGTTGACTCATGGAAATCCCTAAGGGAACATTTTCTATTAGCACATACTAAAACACCATATATTAAATGTTGTGATATAATTTATCGTAAACCGCGAGCCTTAATTGAACACCTTGAGTGGCATAAAAATCCTGATATGTTCAATTGTCAAATTTGTAATAAGAATATGTCCAGCGCCCGTAATTTAACCATTCACATTACATCAGAACATCCCGATAAAGCAGACATAATAGAATTTTACGAATGTGAGCATTGTTCAAAACGTATACGAAATTATAACttgtttaaaaagcatttacgATCACACAACAAAGATAAGGAAGTTGAATGTCACATATGCAACAAAAGaTTTACATCAGAATACCATTTAGATCGCCATATCAgtaattttcataagaaaaaaacttctCACATCTGTGATATTTGTGGTCGTTGCTATAGAAATAAAGCCGCTTTTAAACGTCATTATGACGAACATCAGGGTATTATCTCCCAAGCTGTACAGTGCTCGATCTGTAGCACATGGCTCAAGAACGAAGATTCGTTACGTTTACATCGTTTTACGCATGAGGAACATCCAACGCCGTGCGATATTTGtggtaaaatgtttaaaacaaaacgtaGACTATATAGACATAAAGTATACTGGCATACATTGGATACAAATTTACAATGTAGTTTTTGCGATAAAGTGTTTCGTGAGAAGCGTAATCTTGATGAACACATGGCCATACATACCGGCGTTCAACTTTATACATGCCCCCATTGCGGAAAAGACTCACGTTCCAAATccaatatgtatgtgcatattaaAAGAATACATCCAGATGAATGGTGGAAATCGAAAATGGAACGTCTGAACTTGAAACCTAAAAATGCCGTTTACTCCGAAGAGTGTCAccagaaataa
- Protein Sequence
- MICRLCLKDIPNESWIKLYENFNPPSECLEMVKLINKYLEIDIKHNDIVSTVICQDCYDHLEEFHRFSQQVAEKQLSLRNEFLDVNLKKEFNFEDSWGNDEREDKLPMEPVLSTHGIVDSCAINMFKNESDNDDKDEQEIPTEDLFENVSNEKDIIAPDSVTINLESNIQDEISSDGDDDIPLIKLKTAARPSRKQKVKNHSTPQEKKPAKKKLSAEKEVAMLMELICELCQTRVDSWKSLREHFLLAHTKTPYIKCCDIIYRKPRALIEHLEWHKNPDMFNCQICNKNMSSARNLTIHITSEHPDKADIIEFYECEHCSKRIRNYNLFKKHLRSHNKDKEVECHICNKRFTSEYHLDRHISNFHKKKTSHICDICGRCYRNKAAFKRHYDEHQGIISQAVQCSICSTWLKNEDSLRLHRFTHEEHPTPCDICGKMFKTKRRLYRHKVYWHTLDTNLQCSFCDKVFREKRNLDEHMAIHTGVQLYTCPHCGKDSRSKSNMYVHIKRIHPDEWWKSKMERLNLKPKNAVYSEECHQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -