Ooch014036.1
Basic Information
- Insect
- Ormia ochracea
- Gene Symbol
- -
- Assembly
- GCA_963402855.1
- Location
- OY727109.1:19540201-19543772[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.012 0.7 10.5 5.0 1 23 359 382 359 382 0.95 2 12 0.0012 0.067 13.7 2.5 2 23 385 406 384 406 0.97 3 12 0.00019 0.011 16.2 0.2 1 23 413 435 413 435 0.98 4 12 8.4e-06 0.00048 20.5 1.4 1 23 441 463 441 463 0.98 5 12 0.00062 0.036 14.6 3.0 1 23 470 492 470 492 0.98 6 12 1.4e-05 0.00079 19.8 3.4 1 23 498 520 498 520 0.96 7 12 4.5e-05 0.0026 18.2 0.1 1 23 526 548 526 548 0.98 8 12 4.2e-05 0.0024 18.3 0.9 1 23 554 577 554 577 0.97 9 12 0.004 0.23 12.0 1.9 1 23 583 606 583 606 0.94 10 12 2.2e-05 0.0012 19.2 0.7 1 23 612 634 612 634 0.98 11 12 9.7e-05 0.0056 17.1 0.5 1 23 640 662 640 662 0.96 12 12 0.0011 0.066 13.8 0.2 1 22 668 689 668 692 0.92
Sequence Information
- Coding Sequence
- ATGGAATCAGTACGTTGTTATTTATGTGACCATGAGTTTGTGAAAGGCGAAGAGCCATGGCTGATGTTTGAGCACAGATTGCGTGAAGATGGAAAAGTGGAATGCTCATTGGCCGAATTGATAGGTGGAATCTTAAAGAAACACTTAGAAGAATCTTCGGCTCATTCTACGTTGCTTTGTGATTCCTGTAACGCAGATGTACTGGAGTATGAAAATctggaaaaacaattttacctAATACGGGAAAGAATTTTAACTTCATATAAAGAGAATTTGACTATAcggaatttaaataacttgttGCAAATCACCGCCTTTACCGATAGTTCTTCACCGCATCAACtcaatgaaaataacaaattacttGTAACCAATTCTGATGATATAGTAGACAATTTGTCTAACTCAGAATATGCTGCTATCATCGATACGGATTTAGTTGAAGAAGTGCAAGATGAAGAGTTAGAACCCGAATTACATGATGATGTGAATGTTTCAGagaatgaaaatatatctCATCATGGTGAAAATGAATTCATGGACGATGTTAAAACTAAGATAATTGACAATTACGATTTTGCTGCTTTTAATGAGCACGTAGCTCAAAATTCTTTACCTTCTGGTGTGTTAAATTTATCAGACAGTCTAGTGAATTTAGATGTGTCGGATAGGTCTTTAGAAGTTCGAGATATATCTGACCAGCACGACATTATTATTTACGATGTGAAGACGGGAAAAATTCACCAGGATGATTTGATTGTACAAGATGATTGTGGGGATTTAACAAGTTATGAAGCTACTGTCGATGAtgatcttaattttattatcagcTCAGATATTCTTACAAGTGATGGTAACTGTGAAGAGTCTCAGCAATCGCCTGTTTCCGAAGTGAAAGAGTCTTGTAGTAGAACTCAAAAGGAAACGGGACATCTACAGACACCAAAAATCTCTCCAAATCCTGTTTGCAAGAAAGATGGCGAGAAGTTTTTTTGTCTTCTTTGTGAAAACTCAGACCAATTTGAATGTCCTTCCTTGGtagaacattttcaaatattccataactcaaaattttatatgtgcgAAAAATGTCATGAAGGATTTCACACAAGCCAAGAACTAAAAATACATACTGAAATTTGCCACATGATTCAGTGTGAATTTTGTGAACGCACTTTTACAAATATGCGTATGTATCGCTTACATAAACGAACTCATTATGTTAACTCGAAACCGTTCGAATGCCCGGTGTGCCAGAAATTTTATGTGTCGAAAGCGATTTTGGAAGATCATATGAACACCCATACAGGTGTAAGACCTTTTCAATGCACTCAGTGTTCTAAAGATTTTGCTTCAAAATATACACTACAgattcatttgaaaattcatcAAGAACGACCGCGTCCATATCAGTGCGATCAGTGCCAGAAGCgttttttaaatcaacaaaACCTGAACCAACATAAGAAGTTACATGTCTCTGTAAGAGCCTTCCAATGTGACAAGTGCAGCAAGACGTTCACCACACAACACAGTTTGCAAGTTCATAAGGTTGTTCATACGGGGCAGAGGCCATTCATTTGCCGGATTTGTGGCAAGGCCTTCGCAAGAAGACCGGAAATTCAAGATCATGAGCGAACTCATACTGGCGAAAAGCCCTTCAAATGTGACTTCTGTCCAATGGCATTTGCGCAGCGCACTAATTTAGCCACTCACAGAAAATCAACTCATTTCAATGAGAAGTTACATAAATGTGATATATGCTTAAGATCTTTTAAACGTAAACGTTTGATGGATTATCATATACAGGCTATTCATACAGGCGAGCGTCCATTCAAATGTGGTATATGTGGCTCAGGATTTGTATATCCCGAACACTACAAGAAACACATGCTGATACATAGTGGCAAAAAACCATACGCTTGTGAAGTGTGtggcaaacaatttaatagtCGTGATAACCGTAATGCTCACCGTTTTGTGCATAGCGACAAAAAGCCTTACGAATGTATGGATTGTGGTGCGGGTTTCATGCGCAAACCTTTACTTCTATCGCACATGAAACAAACAAAGCATATAAATgatacaattattataaatcaacCTCAATTTACTCAACACTTGACTGAGAAAACTGAAGTACCATCTTCTGCGCAATCTGCTACTTTACATGGAGAGGATTCGGAAATAGATGTTGACAATGATCTCAAGTCGCAAGACGTATCCGATGAAGCATTTgagaaaatcatatttaatgaTCAGTTAATTAAGGGTGATTTAGATcatgtgaaatatttagaatttgaTGATTTGGAACGTGATGGGCATCAAACTCTAAACTGGGTGCACTTAGGTGCTGTTGATAAAGTTTAA
- Protein Sequence
- MESVRCYLCDHEFVKGEEPWLMFEHRLREDGKVECSLAELIGGILKKHLEESSAHSTLLCDSCNADVLEYENLEKQFYLIRERILTSYKENLTIRNLNNLLQITAFTDSSSPHQLNENNKLLVTNSDDIVDNLSNSEYAAIIDTDLVEEVQDEELEPELHDDVNVSENENISHHGENEFMDDVKTKIIDNYDFAAFNEHVAQNSLPSGVLNLSDSLVNLDVSDRSLEVRDISDQHDIIIYDVKTGKIHQDDLIVQDDCGDLTSYEATVDDDLNFIISSDILTSDGNCEESQQSPVSEVKESCSRTQKETGHLQTPKISPNPVCKKDGEKFFCLLCENSDQFECPSLVEHFQIFHNSKFYMCEKCHEGFHTSQELKIHTEICHMIQCEFCERTFTNMRMYRLHKRTHYVNSKPFECPVCQKFYVSKAILEDHMNTHTGVRPFQCTQCSKDFASKYTLQIHLKIHQERPRPYQCDQCQKRFLNQQNLNQHKKLHVSVRAFQCDKCSKTFTTQHSLQVHKVVHTGQRPFICRICGKAFARRPEIQDHERTHTGEKPFKCDFCPMAFAQRTNLATHRKSTHFNEKLHKCDICLRSFKRKRLMDYHIQAIHTGERPFKCGICGSGFVYPEHYKKHMLIHSGKKPYACEVCGKQFNSRDNRNAHRFVHSDKKPYECMDCGAGFMRKPLLLSHMKQTKHINDTIIINQPQFTQHLTEKTEVPSSAQSATLHGEDSEIDVDNDLKSQDVSDEAFEKIIFNDQLIKGDLDHVKYLEFDDLERDGHQTLNWVHLGAVDKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -