Ooch003409.1
Basic Information
- Insect
- Ormia ochracea
- Gene Symbol
- su(Hw)
- Assembly
- GCA_963402855.1
- Location
- OY727105.1:63133612-63138077[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00077 0.044 14.3 2.6 1 20 132 151 132 153 0.94 2 12 6.3e-06 0.00036 20.9 0.4 3 23 204 225 202 225 0.93 3 12 0.27 16 6.3 0.1 1 23 231 253 231 253 0.93 4 12 6.1e-06 0.00035 20.9 2.1 1 21 260 280 260 281 0.95 5 12 2.6e-05 0.0015 18.9 2.2 3 23 294 314 292 314 0.96 6 12 7.3e-06 0.00042 20.7 4.3 1 23 325 347 325 347 0.98 7 12 5.5e-05 0.0032 17.9 1.3 1 23 353 375 353 375 0.97 8 12 1.4e-05 0.00079 19.8 1.0 1 23 381 403 381 403 0.99 9 12 1e-05 0.0006 20.2 1.3 1 23 409 431 409 431 0.97 10 12 0.00058 0.033 14.7 2.0 1 23 435 457 435 457 0.96 11 12 0.0017 0.098 13.2 0.6 2 22 471 491 470 494 0.91 12 12 1.4 80 4.0 0.2 3 23 509 530 507 530 0.93
Sequence Information
- Coding Sequence
- ATGAGTTTGAAAGAGGAAAATCACAAATCGAAAACTAGACGTTCTAGTTCGGGAGTTAAAATACTTAATGATGAAAAAGTTATCGCACCTCTGCCATTTAAAATACCAGTAATGACTTCAGTGCCGTCGTCACCACCTAAACAAATTACGTTGTCCATTGCTAAACCAAAAAAGgatttgaaacaaaagaatatgGATCATTACGTATTGAAAACGGtcaaaggagaaaaaaatactGATAATGGTATTGAAGAAAGTGAAACCATTGATTTTGTATTGAGAGAAAATAATGAGGACGAATCGTCTAAGATAGGGGAAGAAATTACAGAAGAATTACATTTAAGTGATGATGAAGAGCAGGATTCTACAGTAGCCGGACCCGATTTTGTTGAGCATGTTTGTGGAAAGTGTTTTAAAACGTTTAGGCGTGTAAAGAGTTTAAAAAAGCATCAAGATTACTGCCTTTTCGATAGTGGTTATGATGAACGGAAGGCcgaaatgttaaaaaacttggaaaaaattgaaaaggatGCAATTCTTATGGATAATAAAGATGTGTGCTTTTGTTGTGGAGAAAACTATGATACATTTCATTTGGGTCACATTAACTGCCCTGACTGTCCAAAATCTTTCAAAACTCAAATGAGCTATGAACGTCATATATTCATAACACACTCAGAGTTTGATACATATCCCTGTAGTATTTGTAATGCTAAATTGCGTAGTGGTAATCTGTTGAAATTGCACGAAGAGCAACATCGCAACCGAGGCAAACCGTTTGCATGCAAAATTTGTGGGAGGGATTTTACGCGCTCTTATCACTTAAGCCGCCATCAAAAGTTTTCTTCGTGTTCTGCTAATGAAAATGACACTATGCACTGTAAAGTGTGCGATAGAGCATTCTATCGTTTAGATAATTTAAGACAACATCTGAAGTTACATTTAGGTACTCAAGAAACAAAGAAATCGGAATACATGTGCCCAACATGTAAGAAATGTTTCTACAGCTTATCAACTCTGAATATTCACACTCGTACTCATACCGGTGAAAAACCATTTGATTGTGATTTATGtgagaaaaaatttccatcaCTAGTTTCTTTGAAAAAGCATAGACGTTATCACACTGGAGAAAAACCCTACACTTGTTCAGTCtGCAAACAATCCTTTGCTGTTAAGGAGGTTCTAAATCGCCATATGAAACGCCATACAGGAGAAAGGCCCCATGTGTGCAGTGAATGCggtaaaagttttatacaaGGCACTCAACTGCGTACACATGCCAAGACACATTTAAGGCCCCATGAATGCAAACAATGtccagcaaaatttaaaacagaaaagcaGCTAGCGAAACACGAAAAAGAGCACAGTTCATTGAAGCGAAAAGGTAGGGTGCCTATGGCAAGCAAATGTGATATATGTAAGATAGGTTTTAAGACTGAAATGGAGTTCAACAATCACATGCAGCAAGGCCGACATGCCAcaccCGCGGAAAGGCGCAGATTGAAGACCCGAACTGATTGTGCAGtgtgcaaagaaaattttgaatctGTGCAAAGTCTTCAATTTCATATACTTAAAGTACATCAGGAAGATCCGGAAACGTTTGTTAACGAACATCCATTTGAAAGCTCTACGCATGTAGAGAGCAGTGATACATTTGTAATGCCCGCGcccaaagtaattaaaattgaagatGCACAAGGCCAACGTATAGAGTTCATTACCACTAATAGTGAAGGTAAAATTTTGAACACAAACGTGCAGGgcttaaataaggaaaaaattttaagtccAGAGAACAAAGCAGCCGATTCGAATAAAGTGCGTATTTTAGAACAGTACATATTCGATGAAAATCCTTCAACATCATTGAGTACTAGTGGGAAGCAAACTATATTCCTATCAAATGAAGCTTTTACTGTAATACCGTTGGAGCCAGAGGGTGCTTTAATAGAGCCCGTTACTGCAGCACCTGTAATTTGTAATACTGCAAGTTCTGAATCCAAAAAGGAACAACGCAAATCTTTAGGCGAAAGTCTGGCAGCTGCAATCGCCGACAATGAAGAAGGTGCTTCTAACACATTTGAAAATACTGAATTATCGGAAGAAgactttaaacttaaaaataacgtAGGTAAACTGCTGGACATGCTAGTAGATACTTTTACACTTAACAAATTTGGGTGGCCACGCATTTCAGAGGAAACTGCGCTTTgcaaagttattgaaaattgcGGCCATGATTTGTCTAAAGACCAATATAACTATACAAGTTGGGATTACGCCGGCCGCATGCGCGAATATGTCAAGTTACTTTTTACGGTTGTGATTCACAatgattcaattaaagaattacTCAATAACTATCCGATTGATGAAGTTATTGAATATGTTTTAGGAAATGATGAAGATGACGATGATGAGGATGAGGACGACAATTCAAACGAAACAAAAGACAAAGATgccaattcaattttaaacacCATCAAACGTGAAAAtgatgattaa
- Protein Sequence
- MSLKEENHKSKTRRSSSGVKILNDEKVIAPLPFKIPVMTSVPSSPPKQITLSIAKPKKDLKQKNMDHYVLKTVKGEKNTDNGIEESETIDFVLRENNEDESSKIGEEITEELHLSDDEEQDSTVAGPDFVEHVCGKCFKTFRRVKSLKKHQDYCLFDSGYDERKAEMLKNLEKIEKDAILMDNKDVCFCCGENYDTFHLGHINCPDCPKSFKTQMSYERHIFITHSEFDTYPCSICNAKLRSGNLLKLHEEQHRNRGKPFACKICGRDFTRSYHLSRHQKFSSCSANENDTMHCKVCDRAFYRLDNLRQHLKLHLGTQETKKSEYMCPTCKKCFYSLSTLNIHTRTHTGEKPFDCDLCEKKFPSLVSLKKHRRYHTGEKPYTCSVCKQSFAVKEVLNRHMKRHTGERPHVCSECGKSFIQGTQLRTHAKTHLRPHECKQCPAKFKTEKQLAKHEKEHSSLKRKGRVPMASKCDICKIGFKTEMEFNNHMQQGRHATPAERRRLKTRTDCAVCKENFESVQSLQFHILKVHQEDPETFVNEHPFESSTHVESSDTFVMPAPKVIKIEDAQGQRIEFITTNSEGKILNTNVQGLNKEKILSPENKAADSNKVRILEQYIFDENPSTSLSTSGKQTIFLSNEAFTVIPLEPEGALIEPVTAAPVICNTASSESKKEQRKSLGESLAAAIADNEEGASNTFENTELSEEDFKLKNNVGKLLDMLVDTFTLNKFGWPRISEETALCKVIENCGHDLSKDQYNYTSWDYAGRMREYVKLLFTVVIHNDSIKELLNNYPIDEVIEYVLGNDEDDDDEDEDDNSNETKDKDANSILNTIKRENDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -