Ooch009319.1
Basic Information
- Insect
- Ormia ochracea
- Gene Symbol
- -
- Assembly
- GCA_963402855.1
- Location
- OY727107.1:42289300-42296325[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0015 0.089 13.3 0.3 1 23 124 147 124 147 0.94 2 13 0.0018 0.11 13.1 0.9 2 23 153 175 152 175 0.97 3 13 7.7e-07 4.5e-05 23.7 3.4 1 23 184 207 184 207 0.97 4 13 4.2e-05 0.0024 18.3 5.2 2 23 432 453 432 453 0.98 5 13 2.9e-05 0.0017 18.8 3.6 1 23 459 482 459 482 0.96 6 13 0.00038 0.022 15.2 1.4 1 23 487 510 487 510 0.98 7 13 4.6e-05 0.0027 18.1 1.2 1 23 521 543 521 543 0.95 8 13 0.0015 0.085 13.4 2.3 1 23 548 571 548 571 0.96 9 13 2.5e-05 0.0014 19.0 0.8 1 23 577 599 577 599 0.96 10 13 0.00011 0.0065 16.9 1.9 1 23 605 627 605 627 0.98 11 13 5.8e-07 3.4e-05 24.1 1.6 3 23 635 655 634 655 0.99 12 13 5.2e-07 3e-05 24.3 0.4 1 23 661 683 661 683 0.99 13 13 0.0021 0.12 12.9 0.2 1 23 688 711 688 711 0.98
Sequence Information
- Coding Sequence
- ATGGATATAAGTACTAGCTATAACAAAAGTGAACTTTGCCGCATATGCATGCAGaatcatacaaatttattttccatcttTAATAAAGTAAGTTTCGGCAACAAAGCTATCACTATAgctgaaattatttcagagTGCACAAAGTATCCAGTTGCACATAATGACCAACTTCCAACTCAAATATGCAGTGCTTGCGTGGAAGCGGCACAAAATGCACATAAATTTAGAAAGCAAACAGAAGCTGCTTATTGCAGATTAAAGGCGTTGTATGATATAACTTGGGTTCCCAAACATGAGAAAGAGGGTACTGATGTGGGTTTGAGTTCCCTCAGAATAGACAAATATACGCAAACTGAGAAAAGCAGTGTGTTTCTGTGTGAGATTTGtccgaaaaaattttttgtggaacGTGAATTAAGGGAACATCGCGCCACCGAACATGCTCAGGACGGAAAAAAATGCCGTGTTTGTGGAGACGTATTTAATCATTTGGGCCAATTAAAAGTTCATTTATCAACAGAACATCCAAGCGAAGGTATACGTTGTGATTTCAAATGTAATATATGCTCCAGAGAATTTACTCGCAAAGATCATTTAAAACGGCATTTAATACGAGTGCACAAGGTCGAGCATAATAACTTAAATATCACAAAAGTATCATCTGATGATCAGCAAATCGAAAATCGTGCCGGCCCATCAGTAAGCTTAAATAACTTTAGTAGTCATTGGCCAGATTATCAAGATGACGATAACGAGCCAATTATAATGGATAGgcaaaaaaatgaaagcattGCTGCAACAAATCCATTCTCTAGTGAGGATGAGGGACTAGATCATCATGATTTCAAtgatattaaagaatttgtaGATACTATAGCCCATCcagaaatattcattaaagTGGAAAATCCTGACTACAGTTATTGCAATGCAAgtgacaaaaatgaaaaagattttaaatcgACTGGTAGCTCTTTCGATGATATTAATCCTCGTATATCGGTATTTAAACCGGAAAAATCGGATGATAATttggaaacaaaagaattctATGAGGAAGatgagcaacattttttaaacaattcaatAAATGATCGCGATAGTAAAAATGATTCTAGTGAGGAGGTATCTGATGATGAatatgacgatgacgatgatgataaTGACTCTGATACTATTGGGAATCCTACCAAGAGTTTGACGCGAGCGGCCCTCAAACGAAGAAAATTTGATGGTAAAAATGATAATCCTTCGAGTTCAAATACAAAACCACAATCAAAACATACGGATAATCGCTGTAAAGAATGCAATCGCACATTCACCCGCTATAATCATATGCTGCGGCATATGCTTACACACAGCGATGAAAAGCCgcatatttgcaatttttgtgcCAAGGGATTCTCCCGGTCggatcatttaaaaaaacatatacaaaGTATACACTGTGAgaagaattataaatgtgaTCAGTGCGCAAGTGCGTATGGGCGGAAGGATCATTTGCAAAGGCATATCGAAACGAGACATAACAAAGATCCTGCAGTACAAAAGCCACAATTTGATTGTGACATGTGTGAGAAAAAGTTTACCACCAAAGCATATCTGGCAAAACATAAACTGCTTCATACTGATCGCCTTTACGCTTGCAAACATTGCCCGGAAACTTTTCAGGAAAAGGAGCAAATGAAGGaacatcaaaaattaaaacataccCAGCCACGAAATTTCTTGTGCAATATTTGTGGAGACTCATTTCAACGAAATGAATATCTTAAAATTCATATGCGCCGTCACACTGGCgaaaaaccatataaatgtCGCTTTTGCGAAAAGGGTTTTCCCCGCAGTACTGATCTGAAAATGCACGAAAGatatCACATGGGTCATAAGCCAAACCTGTGCAATTTATGCGGCAAAGGCTTTCATCGTCCCTACAATCTCACTATACATATGCGCACACATACCGGCGAAAAACCTTACAAATGCACTCAATGTCCTCAAGCGTTTGCTCAAAGTAACGATTTGAAAGCTCATATTCGACGCCACACGGGAGAGCGGTTTCGTTGCGATTTGTGCAGTGCTGCATTTTTGCAACGTTACGGATTAAATGCACACCTAAGAACAGTACATAGCATCATAGTTACGTCATTTACCGGACGGTTGCGAAAAACAGATCAACCTGCTGATGGTCCTGAGCTGCACGATCAAAAGGAAGCAGCAGCTCTACAAGCTGAGCAGTTGGTTACTGTACAAGATCAGTCTCATTCCTCACACCCTTCTCCCCCTTTAATTAGTAACGGCACACCCTCACCTTTGTATACAGCTCATCAATATATAAATCCCTTATCAGTTGCTGTTCCCACTACACAAACATCTCCTATTGACATTTCATCGTCAAGCACATTGGCTCTCTCCTTAACACATCCTCCGCCCCCAcatatgtaa
- Protein Sequence
- MDISTSYNKSELCRICMQNHTNLFSIFNKVSFGNKAITIAEIISECTKYPVAHNDQLPTQICSACVEAAQNAHKFRKQTEAAYCRLKALYDITWVPKHEKEGTDVGLSSLRIDKYTQTEKSSVFLCEICPKKFFVERELREHRATEHAQDGKKCRVCGDVFNHLGQLKVHLSTEHPSEGIRCDFKCNICSREFTRKDHLKRHLIRVHKVEHNNLNITKVSSDDQQIENRAGPSVSLNNFSSHWPDYQDDDNEPIIMDRQKNESIAATNPFSSEDEGLDHHDFNDIKEFVDTIAHPEIFIKVENPDYSYCNASDKNEKDFKSTGSSFDDINPRISVFKPEKSDDNLETKEFYEEDEQHFLNNSINDRDSKNDSSEEVSDDEYDDDDDDNDSDTIGNPTKSLTRAALKRRKFDGKNDNPSSSNTKPQSKHTDNRCKECNRTFTRYNHMLRHMLTHSDEKPHICNFCAKGFSRSDHLKKHIQSIHCEKNYKCDQCASAYGRKDHLQRHIETRHNKDPAVQKPQFDCDMCEKKFTTKAYLAKHKLLHTDRLYACKHCPETFQEKEQMKEHQKLKHTQPRNFLCNICGDSFQRNEYLKIHMRRHTGEKPYKCRFCEKGFPRSTDLKMHERYHMGHKPNLCNLCGKGFHRPYNLTIHMRTHTGEKPYKCTQCPQAFAQSNDLKAHIRRHTGERFRCDLCSAAFLQRYGLNAHLRTVHSIIVTSFTGRLRKTDQPADGPELHDQKEAAALQAEQLVTVQDQSHSSHPSPPLISNGTPSPLYTAHQYINPLSVAVPTTQTSPIDISSSSTLALSLTHPPPPHM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -