Ooch007832.1
Basic Information
- Insect
- Ormia ochracea
- Gene Symbol
- -
- Assembly
- GCA_963402855.1
- Location
- OY727107.1:11800865-11812003[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 3.8e-05 0.0022 18.4 0.8 1 23 198 220 198 220 0.93 2 18 3.2e-05 0.0019 18.6 0.1 1 23 226 248 226 248 0.97 3 18 0.00021 0.012 16.1 1.4 1 23 255 277 255 277 0.96 4 18 6.6 3.8e+02 1.9 0.9 1 9 283 291 283 291 0.91 5 18 1e-05 0.00058 20.2 1.5 1 23 343 365 343 365 0.93 6 18 1.8e-06 0.00011 22.5 0.1 1 23 371 393 371 393 0.97 7 18 9.8e-05 0.0057 17.1 1.1 1 23 400 422 400 422 0.96 8 18 3.4e-07 2e-05 24.9 1.3 1 23 428 450 428 450 0.98 9 18 2e-06 0.00012 22.4 3.5 1 23 456 478 456 478 0.99 10 18 0.011 0.65 10.6 0.2 1 23 484 506 484 506 0.98 11 18 0.034 2 9.1 3.5 1 23 566 588 566 588 0.96 12 18 0.0014 0.08 13.5 1.3 2 23 599 620 598 620 0.97 13 18 1.4e-05 0.00083 19.7 1.1 1 23 626 648 626 648 0.92 14 18 0.00052 0.03 14.8 0.4 1 23 654 676 654 676 0.94 15 18 3.3e-05 0.0019 18.6 1.7 1 23 683 705 683 705 0.97 16 18 2.9e-05 0.0017 18.8 2.2 1 23 711 733 711 733 0.97 17 18 0.00038 0.022 15.2 3.3 1 23 739 761 739 761 0.98 18 18 0.0011 0.066 13.8 0.2 1 23 767 789 767 789 0.97
Sequence Information
- Coding Sequence
- atgtcggTATCTTTTGAAACTATGTGTCGAATGTGcatgttaaatgaaaataagcaaCGAGAAAtggtgaaaaaaaataaagtgaaaatgaaaacggtacaaatgatttcaatttttgctataCAGGATgaaaccaaagaaaaatttgatttcctggaattaattaaaaacacagtTCCACAACTTAAAATAGATAAGAATGACAAGCTGCCGAAAACGTTATGTTTAGATtgttctgaaaaaattaaagatatatataattttcaacaaaactgTTTAACTAATGAAAAGAAGTTCTATAAAATGTTGGAAGAAAACGACTCCATTGAGCAGCTCATTAAGACTGAAAGCAAAGaagatgtttttaaaattgaatttgaagaTTCATTTATTGAGGAACAATCTCTGCACTCTGATGATGAAATGATTATGGAAGAAGAAATTAACAGAGCCGCTGAAGCAACAGAGGAGTTCATAGAAAGCTGTAGTGATTTAAGTTTTGACTTGGATTATGATGATAATAGTGATGCAGAATGGGATAGGAAAAAGATTCCAAGGGAGCATCAACGCTCACATATTGGTGAAAGGCCGTATCTGTGTTCTGTGTGTGGCAAAGGATTTACGTCGTCAGGGAGCTTAAAACAACATTCATACCGCCATCTAGAAGAACGACAATTTCCATGTCCAGACTGTCCCAGATCTTTTCCTACCAAAACCGACATGCTCTCTCATTATGCTATTCACAAGGCCAAACCCAGAAATCATATTTGTGATGTTTGTGGTCGTGGGTTTTATAAGCCATATTTGTTGAAACAACACAAAATGTATCACAATAACGAGCGACCATTTACATGCGAATTTTGCGGAAAAAGaaaaacagaaaaccgCGATAAAACTAGCATAATAAAGCAAGAAGAACTCGatgatgaaatatttgaatcaGTGGCATACGACGACGATGAAGATGTTAaggatgatgacgatgatgatgaagactatgaagattttaatttaagtGAAAAACCTTTCTTATGTTCAGAGTGTGGTAAATCATTTACATCATCCGGCAGTCTGAAGCAGCATTCTTATCGCCATCTAAATGAGAAGCCATTCTCCTGTCCAGACTGCCCAAAATCATTCCCCACTAAAACTGATTTGGCTTCGCACTATGACGTTCATAAGGCAAGACCTAGAACGCATATTTGCGATATATGTGGGCGTGGCTTTCCAAAAccgtttcttttaaaaaagcataaaatgtaTCACACAAACGATAGGCCGTTTTCTTGTGAATATTGTGATAAACGttttataacaaatgaaaaactacAACGTCATGTAAGAATTCATACTGGTGAAAAGCCTTACAAATGCAACTATTGTGAAAAGGCCTACTGTCAATCAAATGAATTAACCAAACATTTGAGAGTTCATTTAGGTGATAATGTATATCAATGCGAATTGTGCCCCCTAAGATTTCCAACTGTTAAAGCTGTTCGTGAACACTTCTCTACGCATAAAAATGACGATGAAGAGACAAAAGTGCGTAACTTGGGTGAACTGAATGCTATGActaaattaaataacatagaaaatggaaaggttaaagccaaaaataaaaacctaaataaaacattaaaacggTCGTATTTAAAGTGCTCTGGAAAATCCAACCAACATAACACAAATGAACTTTATTCTTGCGGAAAATGTCAAAGAAAGTTGAAATCAAAGCTATCATTAATGAAACATCATGAGCTGCACTTGCAAAAAGACAAAGAAGCAAAAGAATTGAAATGCAAAGTTTGTAATTTagATTTTTCGGAAATGGCCACCTACAAAAAGCATCAACAAACACATATCTACGAAAAACCATTCTTATGCTCTGAATGTGGTAAAAGTTTCACATCAGCCGGAAGTTTGAAACAGCATTCATTTCGCCATTTGGAACAGAAACTTTATCCTTGCTCGGAATGCCCTAAATCATTTCCTACAAATGGTGACCTACTTTGTCATTACGAAATACATAAAGCAAAGCCGAGAATACACGTTTGTGAAGTATGCGGTCGTGGTTTCTACAAACCGTTCCTGCTAAAACAACACCAGAGATATCACAATAATGAAAGGCCATTTGCatgtgaattttgtgaaaagcgATTTGTCACTAGTGAAAAACAACGTCGGCATATGCGTACTCACACTGGTGAAAAACCTTATCGATGTAAATATTGTGATCGAGCTTTTGCCCAAAGTAACGACTGTATTAAACATTTACGACAACATTTAGGTGATAACGTCTACCAATGTGAATTATGTCCGTTAAGATTTCCATTTGCTAAAGAATTACGTGTTCATTTCGCCAGTCATAAAGGTGAGAATGATGAAACACGGTGCCAGAATCTAAAGGCTCGattagaagaagaaaaacacttacaaattaaattaaattag
- Protein Sequence
- MSVSFETMCRMCMLNENKQREMVKKNKVKMKTVQMISIFAIQDETKEKFDFLELIKNTVPQLKIDKNDKLPKTLCLDCSEKIKDIYNFQQNCLTNEKKFYKMLEENDSIEQLIKTESKEDVFKIEFEDSFIEEQSLHSDDEMIMEEEINRAAEATEEFIESCSDLSFDLDYDDNSDAEWDRKKIPREHQRSHIGERPYLCSVCGKGFTSSGSLKQHSYRHLEERQFPCPDCPRSFPTKTDMLSHYAIHKAKPRNHICDVCGRGFYKPYLLKQHKMYHNNERPFTCEFCGKRKTENRDKTSIIKQEELDDEIFESVAYDDDEDVKDDDDDDEDYEDFNLSEKPFLCSECGKSFTSSGSLKQHSYRHLNEKPFSCPDCPKSFPTKTDLASHYDVHKARPRTHICDICGRGFPKPFLLKKHKMYHTNDRPFSCEYCDKRFITNEKLQRHVRIHTGEKPYKCNYCEKAYCQSNELTKHLRVHLGDNVYQCELCPLRFPTVKAVREHFSTHKNDDEETKVRNLGELNAMTKLNNIENGKVKAKNKNLNKTLKRSYLKCSGKSNQHNTNELYSCGKCQRKLKSKLSLMKHHELHLQKDKEAKELKCKVCNLDFSEMATYKKHQQTHIYEKPFLCSECGKSFTSAGSLKQHSFRHLEQKLYPCSECPKSFPTNGDLLCHYEIHKAKPRIHVCEVCGRGFYKPFLLKQHQRYHNNERPFACEFCEKRFVTSEKQRRHMRTHTGEKPYRCKYCDRAFAQSNDCIKHLRQHLGDNVYQCELCPLRFPFAKELRVHFASHKGENDETRCQNLKARLEEEKHLQIKLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -