Ooch006106.1
Basic Information
- Insect
- Ormia ochracea
- Gene Symbol
- -
- Assembly
- GCA_963402855.1
- Location
- OY727106.1:37600735-37602594[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.2e-08 1.7e-05 24.5 0.0 8 39 397 428 395 432 0.91 2 4 3e-14 4.3e-11 42.4 0.0 5 44 448 487 445 488 0.93 3 4 0.015 21 4.9 0.0 27 38 517 528 513 534 0.88 4 4 7.9e-15 1.1e-11 44.2 0.0 4 41 556 593 556 595 0.92
Sequence Information
- Coding Sequence
- atgaatcactTAAGGTGGATGGGTCATTCGGCCACAATATTAGatatacacaaaaatttacgaGCAGATTTGAAGAGCTGTGAAGTTACATTGGTGGCCAAAGGACATTGCGTTAAAGCCCATCGTTTCGTTTTATCCTCTTGTAGCGACCTGCTGCGTTGTCTGCTAACTGATGTTCCCATTGGGCAGGAATGTTGTCTTATGATTCCCGATATTAAAGGCCATTTGCTGGATAGTGTTTtagcttttatatatttaggaGAGTGTTCCCTGTCGTCCACAAATTTATCTGAGTTTTTAGAAGCAATTAATGTGTTAGGTATTAAAAGTGCAATCAGTTTTGAATGTAACACAAACGCGTTACAGGCTGCACAGAATAGCAATACCAGCACCATCGCAATAGATAGCACTGAACCTATGGCGACTTTAAATAACACATTATCTAATACACATGTAACAGATGGGAGTGCAACCGACACATTGCATCAGGAAGAGATTATTGAAactcaaaatataattcataatgAGGGCCATACAGCTATTGTAAGTAGTGCAAATAATTCTACTGGAGCGAGAGaacttgattttttaaatgtataccACGAACCCCAACACAAAATAACATATTCAATAGAACATGTTCCGGGCTCAACAGCaggaaatgaatttattttaacagaaaACTCCGGCACATTCACTCTAACCCATAGTGGTAAATTGGAACAAACGACTTCTCCCGCGGAATCATCTAACATGGAAGTTACAGAGGACGATGGTTGTGATACACATATAATAGAAGAATATAGCAGCAGCGACGAACCCCTAATACACATAGGCGAATCCGTACATGATCAAGAAAGTATAACAGTAGCTCAGACGATAACACATCAGCCGCAACTATCAACACCGCTTGTTTCAACAGCGGCGACTGCAACTTCAATTATTCAAGTAAAGCCAAAATTAAAACCCCTTAAGCTAAAACATCCGCAGGGAACGcaaagaataataacaaagatGGAACAAATTTCCGAAAATGTTGCAGGTGACGATCCCATATCAATATTACAGACATCAAATGAAAGTTTCACATTGCTTAAAGAAGCTTCAATAATATCTACAAGTAACACTAGTCATGACGAGTCAACTGATTTTTCCATGAACAACCCAGACACATCCGCAACTGAATTGGCATATCAAGCTATCATGAATGAGGGCATGTCTTTACCAAAGGCTgccgaaaaatttaatgtttccaAAGCGGAACTGTGGCGACGTGTACGCAGCACCGGAGTGGAGCAGGTCAACAAATCAGTTAAACTTGATCCTGACAAGATAGACGTTATAGAACTAGCCAGTAAGGCAGTAATAAACGAAGGTTTATCACTACAAAAGGCCGCCATACGCTACGATATATCGAAAACTGTACTCTGGCGCAGAGTGCGGAAACATCCGCAGTATATGAAAACAGCGCGTGAAAACCCTGTAATTACGAAAGCCTACGAACGACTGAAATCTGGTGATTCGCTTAAAAGCATATCGCAAGATTTGGATATACCCATGTCTACATTGCACAGGCATAAGGTGCGCCTCTCCCAAACCGGTCAATTGCCGGACTTTGTTACTTGCAAAAAGCGTGATAGTATGTCAAAAGACGACCTTAAATTAAAGCTATCGAAAGCCGTACACGCCTGCGTCCACGAAGGAATGTCCCAAAATCATGCTgcgaatttatttcaaatttccaaGAGCACATTGTGGAGACACCTACAAAAACGTGTAGCTGAAGCGGAAGCTGAAGCTGCCGAAACCGAGTCTATGGGCGATGATGATGAAATCAAACAGGAAGTCATACTTTCATAa
- Protein Sequence
- MNHLRWMGHSATILDIHKNLRADLKSCEVTLVAKGHCVKAHRFVLSSCSDLLRCLLTDVPIGQECCLMIPDIKGHLLDSVLAFIYLGECSLSSTNLSEFLEAINVLGIKSAISFECNTNALQAAQNSNTSTIAIDSTEPMATLNNTLSNTHVTDGSATDTLHQEEIIETQNIIHNEGHTAIVSSANNSTGARELDFLNVYHEPQHKITYSIEHVPGSTAGNEFILTENSGTFTLTHSGKLEQTTSPAESSNMEVTEDDGCDTHIIEEYSSSDEPLIHIGESVHDQESITVAQTITHQPQLSTPLVSTAATATSIIQVKPKLKPLKLKHPQGTQRIITKMEQISENVAGDDPISILQTSNESFTLLKEASIISTSNTSHDESTDFSMNNPDTSATELAYQAIMNEGMSLPKAAEKFNVSKAELWRRVRSTGVEQVNKSVKLDPDKIDVIELASKAVINEGLSLQKAAIRYDISKTVLWRRVRKHPQYMKTARENPVITKAYERLKSGDSLKSISQDLDIPMSTLHRHKVRLSQTGQLPDFVTCKKRDSMSKDDLKLKLSKAVHACVHEGMSQNHAANLFQISKSTLWRHLQKRVAEAEAEAAETESMGDDDEIKQEVILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00199788;
- 90% Identity
- iTF_01109454;
- 80% Identity
- iTF_01109454;