Olae014009.1
Basic Information
- Insect
- Orius laevigatus
- Gene Symbol
- -
- Assembly
- GCA_018703685.1
- Location
- JAGWEN010001058.1:14617-17967[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.023 1.4 9.5 5.0 3 23 229 250 228 250 0.92 2 12 0.027 1.6 9.3 3.9 3 23 321 342 320 342 0.95 3 12 5.3 3.2e+02 2.1 6.9 3 23 456 477 455 477 0.96 4 12 0.036 2.2 8.9 0.2 1 23 521 544 521 544 0.90 5 12 1.4e-05 0.00086 19.6 0.3 1 23 609 632 609 632 0.97 6 12 0.0045 0.27 11.8 0.2 1 23 656 679 656 679 0.94 7 12 0.042 2.5 8.7 4.4 3 23 713 734 712 734 0.97 8 12 0.013 0.81 10.3 1.9 2 23 748 770 747 770 0.94 9 12 0.0012 0.071 13.6 0.8 2 23 814 836 814 836 0.94 10 12 0.0039 0.24 12.0 0.7 1 23 904 926 904 926 0.98 11 12 1.2 70 4.2 0.2 2 23 936 957 935 958 0.82 12 12 0.16 9.8 6.9 0.1 2 23 1009 1031 1008 1031 0.94
Sequence Information
- Coding Sequence
- ATGGCATCCGCCCTATTGCACATGAGCTGCACGCAATTGAAAAATGACAGTGTCATTGGTGGTATGGAATCTGATTCATATGACGAAACGTATTCAGAACTTGGGAGAACCAAAAGGGACCATGACGCTGATGACATGGATCGATGTCAAGTGAAGAAAAGACGAAAGCAATCGAAACCGATCCGAATAGCATCGACTGAATCGCTTCCTTATATCGAGGTCAAGACTGCAACTTGGGCCGGATTGAACCAACCTCCTCTCGAGAATTTAGGCGACGAATACCTCAAACTAGGCGAGAACGAGCACCTCTTGGAGGGCGACAAATCCAACCACAAGAACGACAGCGATGAAGGGAGCAACGAAGAAGGTTGCCTCGAGTCCTACGGAGTCAAAAAAGAGTTCGTTTATCCGCTGAATTTATCGCACACCAAATCTCCATCGCCGAAAGACTCAGTCGATTCGTTCGTCGATGAGAGAAACTGGTACAAAGTTCCTGAAGGCTCTCCCATTTACCCTCTTCATCCTTTAGACCCATCTTCCCTTCGCAATCAGGTCTATCAAAACAACCTTCTTATCCCATCTCAGCCGCCAGGTCTGGTCCTTCCCAACTTCAAAAGGATATTTGTCGGCAATAACGAAACGCAGATCAGTTCTCCCCATCGTATTTTCAACCCAGAAGCGTTTTGTGATCTCTGCAACAAAGAATTTTGCAACAAATATTTTTTGAAAACGCATAAAGCAAACAAGCACGGTATATACATGGAGAATGTGAGTTCCGGAAGTACTGAGAACAACATACCACCTCTACCGCCGATGATAAACTACTTCTCGAACAGCATCCCGACCAGCAATTCTGTCCCGATGATCAATTACTTCTCAAACATCCCAGGGAAGAAGCCAGCCACTCCGGCGGCCACCACTCCAACATGCAGATCGAGCAACAGCAGCATGAGAGCGTTCTGCAACATATGCCAACGTGAATTCTGCAACAAATATTTCGTGCGACGTCACAAAGCGAAGATACACGGAATCATCGAAACTGCCGACGAATCCCAAGAGTACAAGCCCCACATGTCCGCTGGAAACGAAAAGGACGTCCCTGAGGCAAGCGTCCCAGGCCCTTCTGCAAAGCCACCCAAAGAAACCTGTAAAGACTTGACAGACTTGCTTCTCGAAGAAGAAAAAGAAAGAGTGAAAAAAGAGCAAGAAATCGAGCCCGAAATGCCACCTGACAGTCCCCAAAACGCACTCAACCTCTTAGTATCAACTTGGCAGAACGACGAATGCAAAGAAAGTGCAAAATCCATGTCTCCAGACCGCAACAAAAAGCCCCAACCTCAAACATCCACGGGAAACAGCGCGTTCTGTGATATATGTTGCAAAGAATACTGCAACAAGTATTTCCTTCGCGTACACAAACAAAAATTCCACGGTATTATTGTTCCTGAAAAAGACGAAAAAGAAAAGCCCAAAGAAACAAACTCGAATTGGAAAAACCAGCCTATGCCGCTAAATTTAATTTTAAGGGAAACCAACAAAAGTCAGCCAGATGAAGGAATTTTCACATGCAATATATGCGCCATCTCTTTTCCAGAGCTCTACCTCCTCAAAATGCATTCGTCGCAAGTCCACGGGCAACACAAACCAGAAGTTCAGCCAATGAACATCCCCAGCGAGAAGATCAAAATGGATTTATCTCCTCAAACGTCGACCGAAAAGTGCCAGCCCGAAATCAACCTCGACAACGGCAAATCGTTAAGCGCCGACGTCCAAAAACTCCATTCCATGATAATGAAGTTGAACCAAAACGGACAAATGGAAATCTTCACATGCGACATCTGCAACAAAGACTTCGGAAGGACCTCTTCTCTCGAAAACCACATCATAAAAGAGCACGCCATGCTTTTAGAAGAAATCAGCAACGGATTTTACGAAGACATCAACGTTCCCATGAACCTGAGCAAATTCGACTGCCCAAAATGTGCAAAATATTTCCCATCGACCGCTCTCCTAGAGCAGCACATTTCCGAAAAGCATATGTTCGAGACCAAATTAAGAAACGGAGACGAAAACCAAGAAGCGATCTCTCCAATGATGCAAGAGCGCCAAGTCGTCCACACTCCAACCAGCAGTTTTTGCGAAATATGTAAAAAAGAGCTCTGCAACAAGTACTTTATGAAAACACATATGCAAAGGATGCATGGGATATCGATCGAAAATGGTGCACACATTGGAGGAGTCGTTTGTGATATATGTAACAAAGAGCTTTGTAGTAAGTACTTTTTAAGGGTGCATAAACAAAATTCGCATGGCATCGTCGAAGAAGCTTTCCTCCCACAAATTGGGGCTGACGTCAAGTATCAAATTGGCAACACAGATTCCGCACTTAAGCCATCTGAAAACGAGCTGACCCACAGATACTTTAGCCATTTCACAGAAGTCTGTACGATCTGCAGCAGAAGATTTAGGAGCGTAAAATGGCTCAAGACGCATCTTCTCAATGACCATGGGGAAGAAGGTAAAGACAAATGGAGAGAAGTTCAGCTTCAAAATGGAAATAAAGACAAGTTTACTCCGGATCCGTTGAAGAAGACGCCCGAATTGCCATTTTATCCCAACTATCGGAATTGCGGTTCTGAAGAGCCGAGCACGTCGTATCAATCCAACGATTCTCTTTCGACAATGCTAAAAGCGCCCTCGACGAAACAATTCAACTGCTCTTACTGCACATATTCGACTTCAGTTCTCGCCCTCCTTTTCGTCCACGAAAGGACCCATTTTCCAAATAGCGAAAACCTCGACTTACGATGTCCCATCTGCATGGCAAACAACGACTCCCAAGACGCCCTCGAAATCCACATCAACACCCACCACTCGAACTTTTCCAACAAATTCATCGAAGACTTCAACCCTCAACTTTGTGAACCGAACCTGGACACTGAAAAGGAGAATGCGGGGGATGACAATAATTTTAATGAGGTTTCCAATAAGCTTTTTGTTAGGACTTTAGGTGAAGCTTGCTTGAAATGCCCGATATGCCCGTATGTAACTCCTCATTTAGATATATATATCGATCACATTAAAAAAGAGCATAAACTCGACGATATAAGCAAAAATTATTTTCAGATTATTAGAGACGCTTTGTTGCAAATCGCTAATAATTCACTCGTTCCTGCCTCGTTCGCCATTCCCAACAATTTAGGGAATTTCATAATGCAACCTTTCGTCATCGAGGATAAAGGAATCGGATCCACCAATCCGAGCACGTTTATGTCCTCTTTAGTTTTTCTTCCTGTCAAAGAAAGACTCAACAAACCAGTCACAGCGTCCTTTAAACTAACGCCTACGTAG
- Protein Sequence
- MASALLHMSCTQLKNDSVIGGMESDSYDETYSELGRTKRDHDADDMDRCQVKKRRKQSKPIRIASTESLPYIEVKTATWAGLNQPPLENLGDEYLKLGENEHLLEGDKSNHKNDSDEGSNEEGCLESYGVKKEFVYPLNLSHTKSPSPKDSVDSFVDERNWYKVPEGSPIYPLHPLDPSSLRNQVYQNNLLIPSQPPGLVLPNFKRIFVGNNETQISSPHRIFNPEAFCDLCNKEFCNKYFLKTHKANKHGIYMENVSSGSTENNIPPLPPMINYFSNSIPTSNSVPMINYFSNIPGKKPATPAATTPTCRSSNSSMRAFCNICQREFCNKYFVRRHKAKIHGIIETADESQEYKPHMSAGNEKDVPEASVPGPSAKPPKETCKDLTDLLLEEEKERVKKEQEIEPEMPPDSPQNALNLLVSTWQNDECKESAKSMSPDRNKKPQPQTSTGNSAFCDICCKEYCNKYFLRVHKQKFHGIIVPEKDEKEKPKETNSNWKNQPMPLNLILRETNKSQPDEGIFTCNICAISFPELYLLKMHSSQVHGQHKPEVQPMNIPSEKIKMDLSPQTSTEKCQPEINLDNGKSLSADVQKLHSMIMKLNQNGQMEIFTCDICNKDFGRTSSLENHIIKEHAMLLEEISNGFYEDINVPMNLSKFDCPKCAKYFPSTALLEQHISEKHMFETKLRNGDENQEAISPMMQERQVVHTPTSSFCEICKKELCNKYFMKTHMQRMHGISIENGAHIGGVVCDICNKELCSKYFLRVHKQNSHGIVEEAFLPQIGADVKYQIGNTDSALKPSENELTHRYFSHFTEVCTICSRRFRSVKWLKTHLLNDHGEEGKDKWREVQLQNGNKDKFTPDPLKKTPELPFYPNYRNCGSEEPSTSYQSNDSLSTMLKAPSTKQFNCSYCTYSTSVLALLFVHERTHFPNSENLDLRCPICMANNDSQDALEIHINTHHSNFSNKFIEDFNPQLCEPNLDTEKENAGDDNNFNEVSNKLFVRTLGEACLKCPICPYVTPHLDIYIDHIKKEHKLDDISKNYFQIIRDALLQIANNSLVPASFAIPNNLGNFIMQPFVIEDKGIGSTNPSTFMSSLVFLPVKERLNKPVTASFKLTPT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -