Olae002144.1
Basic Information
- Insect
- Orius laevigatus
- Gene Symbol
- -
- Assembly
- GCA_018703685.1
- Location
- JAGWEN010001568.1:8268-10322[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00044 0.027 14.9 1.1 2 23 223 244 222 244 0.97 2 14 1.7 1e+02 3.6 1.3 1 23 283 305 283 305 0.89 3 14 0.00021 0.013 16.0 4.8 1 23 311 333 311 333 0.98 4 14 1.9 1.1e+02 3.5 2.5 1 23 350 372 350 372 0.89 5 14 1.6e-05 0.00094 19.5 1.7 1 23 385 407 385 407 0.97 6 14 0.21 13 6.5 0.9 1 23 410 432 410 432 0.96 7 14 0.0058 0.35 11.4 0.2 1 23 438 460 438 460 0.98 8 14 1.3e-05 0.00078 19.8 1.1 1 23 466 488 466 488 0.99 9 14 0.00038 0.023 15.1 3.3 1 23 494 516 494 516 0.98 10 14 0.0042 0.26 11.9 5.4 1 23 522 544 522 544 0.95 11 14 0.00014 0.0083 16.6 0.2 2 23 549 570 549 570 0.97 12 14 0.002 0.12 12.9 0.4 2 23 577 600 576 600 0.96 13 14 5e-05 0.003 17.9 2.4 1 23 606 629 606 629 0.96 14 14 0.023 1.4 9.5 1.9 2 23 643 664 642 664 0.96
Sequence Information
- Coding Sequence
- ATGGACGAATTGAAGTCCGAAATGAATGGGGACGGACTTGAAGTTAGTGGGATTTTGAGTGAAGTTAAGGCAAAATGTGATGGAAATGAAGTTTCTGAAGTTGAAGTGTCCAGGGACGAAGGTTCAGCAGAAACTTCAATGTTTGATCAAAATGGAGTTTCTGCTGAAGGTTCGATATGTATAAAAAACGATGAAGCTGCACAGGACAGTGCAGTTTCTGCTGCGGAAAGTAATGAGCGTGCTGCGGTGGAGTGTGATGATGACAAAGCTGCAGATTCTGCTGCGACGAATTCTGCTGCTAAGGACATGGCTGATGTGGAATCGAATAATGAAGGTAATGCTATGGACTGTGATGTCAACGCTGTGGAATCAAAGAATGAAGGCACTGCCCTGGATGGAGTAGCTGCCGTGAAGAATGAAGGTACTGTGGAGTGTGATGGTGACAAAGCTGAAGATTCTGCTGTGAAGAATGAAGCTGCTATGGACTGCGATGGCAAAGGAGTGGCTGCTCTAGAATTGAAGAATGAAGGTGCTGCCATGGATGGTGACCAAGAATTGGTGCTTTCGGCGGAAGACGCTGAAGACGAAGGTGTCAAAATCGAAAGCGTCTATTCCTTAAGCCAAATGGAAGTCGAAGAAGATAAGACTGACGAACTCAAAAACCTTCGGTGTTTCAAATGCACCGAAACTTTCACAGAACGTCCAGCATTGTATACCCACTTGAGGACGCATTTGAACAAAAAGGTGTACATATGCGACGAACAGTGCGGGACTGCTATGGACATCAATGAACACATCGAAAAGATGCATTCCAACGACTTACAATGCGCTTCTAAAGTTCGCAAGTTTTACTGCATCTTCTGCGGCTATTTATGTCAGCCTTCAAACAGCATGGTCGTCCATATGAGAACTCATACGAACATGAAGCCGTTCAAGTGCGACAAATGCGACTACAGCTGTCGCACGCGATTCGGCCTTAAGCGACACGAAGAGACTCATTCTCCGAAAGAAGAAGTCAAAAAGGTTGACGAGACGACCGAAAAGAAGTACAAATGCCCTCAATGTGAATTCTCCACTTTGCGATTAAAAGCTTTAAAGTCGCATTGTTTGATGCATGAATATAGATCAAGCATGAAGAAAAAAAAAGAAAGATTCGCTTGCCAACAATGTGATTATAGTTGTACTACTGAAAGCGCCTTGTCGAGCCATATTCGGACTCACGGATCCTTCGATTGCGACCAATGTGATTTCTGCGGACCTTCCCTCTTGGTACTGAATAGACACAAAAGGATCCATACGGGCGAAAAGCCATTCCAATGTGAGGTCTGCGACTACGGCAGTTGGGACTCCAACAGTTTAAAGCTCCATCAGCGTGTTCATACTGGCGAACGTCCCTATTCGTGTAATTTATGCGACTATAAAAGCGCCAGGTCGACATCTTTGAAGATCCATATGAGAATGCATACGGGAGAAAAGCCGTATAAGTGCGACCATTGTGAATACCGAAGTTCGAACAAATCAGGCTTGAAGAGCCATTCAATGATGCATACGGGAGAAAAGCCGTTTTGTTGTAGCCAATGCGACTATAAGTGTTCTTCATCGGGGTCGCTGAAACGGCATAGTATTGTGCATGATAAGACGCCGACTTGTCCTTTCTGCAACCTTGTTTTTCCAACGCAGAGCGTCCTGAGGCTTCATCTCAACTCGCATATGCCGCAGAAAAATTTGGTTTGTCCCGATTTCGAGTGCGATTTCACGACGACAAGCTTTGGATCGCTCAAACTCCATCTGAAGACGCATGAGCAGAGCCGTAGCTTCACATGCCACATCTGCGGCCTCGTCTGCTTTGACGCTTCCTATCTGAACAAGCACCTTAAAGAAGTTCATCGCTTCCCGACCGAGATCGTCATCCGAAAAGCGATCTTGGAATGCGACGAATGCGACTTCAAGACGAAAAGCGAATCCGAAATGAAAGACCACACGCAGCATCACATGAATGAAAATCACTTCGTATCGATTCTAAATCCCGAAGTGAAACTTGAAATCGTTCCGTAA
- Protein Sequence
- MDELKSEMNGDGLEVSGILSEVKAKCDGNEVSEVEVSRDEGSAETSMFDQNGVSAEGSICIKNDEAAQDSAVSAAESNERAAVECDDDKAADSAATNSAAKDMADVESNNEGNAMDCDVNAVESKNEGTALDGVAAVKNEGTVECDGDKAEDSAVKNEAAMDCDGKGVAALELKNEGAAMDGDQELVLSAEDAEDEGVKIESVYSLSQMEVEEDKTDELKNLRCFKCTETFTERPALYTHLRTHLNKKVYICDEQCGTAMDINEHIEKMHSNDLQCASKVRKFYCIFCGYLCQPSNSMVVHMRTHTNMKPFKCDKCDYSCRTRFGLKRHEETHSPKEEVKKVDETTEKKYKCPQCEFSTLRLKALKSHCLMHEYRSSMKKKKERFACQQCDYSCTTESALSSHIRTHGSFDCDQCDFCGPSLLVLNRHKRIHTGEKPFQCEVCDYGSWDSNSLKLHQRVHTGERPYSCNLCDYKSARSTSLKIHMRMHTGEKPYKCDHCEYRSSNKSGLKSHSMMHTGEKPFCCSQCDYKCSSSGSLKRHSIVHDKTPTCPFCNLVFPTQSVLRLHLNSHMPQKNLVCPDFECDFTTTSFGSLKLHLKTHEQSRSFTCHICGLVCFDASYLNKHLKEVHRFPTEIVIRKAILECDECDFKTKSESEMKDHTQHHMNENHFVSILNPEVKLEIVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -