Basic Information

Insect: Orius laevigatus
Gene Symbol: salm
Assembly: GCA_018703685.1
Location: JAGWEN010000058.1:251889-258052[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.34 21 5.9 0.0 3 21 26 44 24 45 0.93

2 10 5e-06 0.0003 21.1 0.9 1 23 308 330 308 330 0.98

3 10 9.9e-06 0.0006 20.1 2.1 1 23 336 358 336 358 0.98

4 10 1.1 69 4.2 3.7 3 23 644 664 643 664 0.93

5 10 8.5e-08 5.2e-06 26.6 1.0 1 23 670 692 670 692 0.97

6 10 7e-05 0.0042 17.5 3.5 1 23 702 724 702 724 0.98

7 10 0.077 4.7 7.9 4.5 2 23 978 999 977 999 0.97

8 10 2.5e-07 1.5e-05 25.2 1.4 1 23 1005 1027 1005 1027 0.99

9 10 1.4e-06 8.4e-05 22.8 4.0 3 23 1183 1203 1181 1203 0.96

10 10 8.8e-07 5.3e-05 23.5 0.6 1 23 1209 1231 1209 1231 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.34	21	5.9	0.0	3	21	26	44	24	45	0.93
2	10	5e-06	0.0003	21.1	0.9	1	23	308	330	308	330	0.98
3	10	9.9e-06	0.0006	20.1	2.1	1	23	336	358	336	358	0.98
4	10	1.1	69	4.2	3.7	3	23	644	664	643	664	0.93
5	10	8.5e-08	5.2e-06	26.6	1.0	1	23	670	692	670	692	0.97
6	10	7e-05	0.0042	17.5	3.5	1	23	702	724	702	724	0.98
7	10	0.077	4.7	7.9	4.5	2	23	978	999	977	999	0.97
8	10	2.5e-07	1.5e-05	25.2	1.4	1	23	1005	1027	1005	1027	0.99
9	10	1.4e-06	8.4e-05	22.8	4.0	3	23	1183	1203	1181	1203	0.96
10	10	8.8e-07	5.3e-05	23.5	0.6	1	23	1209	1231	1209	1231	0.98

Sequence Information

Coding Sequence: ATGGAACAGAAGTCACCAAGAATAGGGGAGAGTTGCTCCGGCTCGGAAGACGAAGGTGGAAGCGGGCAAGTGATATGCCCGCAATGCCAGACAGATTTTCAGAGCTATGCCGAGTTAGCGGAACACGTGAAAGATTGCGCTGGAAAGTCGTGCCCTTCGCCTGGCTCGATAGTCTCGGATGATGAGTATGAGGGCGAGAAGCGGCAAGAAGAAGTCCGACGGCAGCGGCAAGACGCTGAGAACAATAATAGCGTGGAAGAAGACGACGGCGATGTCGGATTTCCTCTGGGCCATGTTACGCTGGAGGCTCTTCAAAATACGAAAGTGGCTGTTGCTCAGTTCGCGGCGACGGCGATGGCGAACAACGCCGACAATCCCGCTGCCCTTCAAGAACTTGCCGTTCTCCAGTCGACCCTATATACGCTTCAACACCAGCAGATGATGCAGCTGAATCTGATCCAGCAACTTCAACAGCAATTGCAGATCACACGGCCGAAAGAGGGCAGTCCTTCCTCCCCTCCTCCTATAAGTGGTCCAAGTAGAACTCCTACTCCTGTAAGGCAGGACATCCCTCCAACTCCGCCGACGTCCCAATCTCTTCCGCCGAGTCTGTCGACGCCGGCTCCTCCCAAAACGGAATCGTCGCCTCCGATTCCTCCTCCCGTTTCCTTACCTCCTTGTTCCATCTCCTCCTCTTTCGCCTCATCCATAATCACGAATTTAGACCCTCCACCTTCTCCTAGCGAGCCGAACACTCTGGAAATGCTGCAAAAACGGGCTCAAGAAGTACTTGACAACGCTAGCCAAGGCCTGTTAGCCAGTAATCTTGCTGACGAGCTAGCATTCAGGAAAAACGGTGGGAAAGGAAGCCTTTCGCCCTACGACTCGAAGACGGGGGGCAGAAACGAGCCTTTCTTCAAACATAGATGTCGCTACTGTGGAAAGGTGTTCGGTAGCGATTCAGCCTTGCAGATTCACATCAGGTCTCACACAGGTGAGCGACCGTTCAAATGCAATGTTTGTGGCAGCCGATTCACTACCAAGGGCAACCTTAAAGTGCACTTTCAACGCCATTCGGCCAAATTCCCTCATATTAAAATGAATCCTAATCCCATTCCTGAGCATTTAGACAAGTACCATCCTCCTTTACTCGCCCAGATGGGAGCTCACCAGAGCTTACCACCGGGGCCACCTCATCCTCCCTATTCCGGGGGGCCTCAGTTTCCCCCTTCAGGACTTCCTCTTTACCGACCACCTCCACCTCACGACCTCGCCCTACCCCCTCACCCGAGACCACCTCTCGATTCCTTGAACAAACCCATCCTCCCTCTTCCGGTCTTCGGCCCCCAGGAGATGCCGGAAAACTTGAGCAAATCGTCCCCCGATCGCTACAAAGAAGAGTTGAGATCCAACGCCGATACCGAAGAGGAACGATTAAGCCCGAAGCAAGAACCCAAACAAGAGATGATGGAGAATGAAAGGTACCCGTCTCCTTCGCCATACGACGACTGCAGTCTCGATAGCAAATACACTTCAGAAGAAATCCCCGGAGAACGGGACAGCCCAGGACTGGATAAAAATGAAGATAGTCAGCAGGACCAACCGGAAAACCTTTCCAATAAAAGTACGTCTGAACTAGGTCACTTTTCTTTTACATCCGATACTCGGTTGCCTCCTCCTGTCCACTTTCCAGAAATCGTCTCCCCTACAAGTAGCACTTCTTCCGGTAGCGTTCACAGAGGTTTTCTATCCTCCTCTCAAGAACCCGATCCTATTAAAGACCCGGCAATCTATTCCAGTCTTCTGCCCAGGCCTGGTAGTACGGACAACTCATGGGAGAGCCTCATCGAAATAACAAAGACTTCTGAAACTCACAAACTGCAACAACTAGTCGACAACATAGAAAATAAAATGACTGATCCGAATCAATGCATAATATGCCACAGGGTGCTCTCGTGCAAGAGCGCCCTTCAGATGCACTACCGAACACATACGGGTGAGAGACCTTTCAAATGCAGAATATGCGGACGATCGTTTACGACCAAAGGGAATCTCAAGACTCACATGGGGGTGCATAGGGTGAAACCTCCGATGAGAATGCTCCACCAATGTCCCGTCTGTCACAAGAAGTTTACTAACAGCCTTGTACTTCAACAGCACATTAGGCTTCACACGGGAGAACCCACTGATCTAACACCCGAGCAAATCCAGGCTGCAGAAATCAGAGATTTCATCCCTCAAGTCCCTCCTTCATCCGAACCCCATTTTCGACCTTTTCAGTTTCCTCAAAACCTAAACCTCCCAAGGGACCCGCCCTCTCTTCCAGGCCTAGATCTCCCGCCGAGATCGCCATCACCAATGTATAACCCACAGGAGGAGGACAAATCCGACTACCTTGAGGAGAGCCGTGCGAGTAGCGTCAGTCCTATTTCAGACGCGGCCTTCTCCACTTCCATAACCGCCCTCGAGAACCAAGTTCGAACTATCACTACCACTGCCTCCCACCATACCCAATCCAAATTTGCCGAAGATTCTGTTGAAGATTTATCTAGTAACAAAGACCATATTACAGTGAACGGAGAAAAGTCGCCCGGATCTCGAGGATTGGACAGCCCTAGTGGATCCGAAGGACCTTTAACGCCTTCACCGCTCCACCACCTAAGCAATTCGGCATTGCATATGCATCGCCATCCGACAAGCCCGTCTGGCGCCTCCGAGTCATCATCGTTGGGCGCGTTAGACCTGACACCACGATCAGGCGGACCACCACCCGGCCTCTTCTCCAGCTTCGGCATAATGCCCCCAGGCTCGATGTCCTCCTCGTCGCCTCTCATCACCTCAGCCCTTTCTTCGCTAACATCCTCCGTTCTCACGACGACAGCCTTCAACCCTCTCGGACTCGCAGTCGGCCCACCAGGTCGGGGGAACACGACGTGCAACCTTTGCTTCAAAACGTTCGCGTGCCATTCCGCCCTCGAAATCCACTACAGAAGTCACACGAAAGAGCGGCCCTTCAAATGCACCATATGCGACAGAGGATTTTCGACAAAGGGGAACATGAAACAGCATATGCTGACCCACAAAATACGAGACATGCCAGCGCACCTGTTTGAACAGAAAAACGGGAGTAGCAGCTCAGGGATGTCTGCTGGAACTTGTACCGCGGGCGGACCTCATCAGCCGCCGAGGGAACAGATCCAATCACAGCAGTCCCAGACGTTGCCGCAACCCCCGACTCAGACGCCTCCGCAGCTTCCGATCAGACCCCCGCAGCAGCCGACGCCTCCTCAACAACAGTCGCTCCCGCCGACGAATCCCGTTCTACCTCCTACCCCTACGCATCAACAGCAATCTCAACAGACTCAGCAGATGCCGCCTCAACCCCCGCAACACCTCATGTCAGACGATAGACCCAGCGGGGAACTCAGCCCTATCCCGCCGCCTCATCATCACAAACCCGAAATCGGCGTCAAACGATCGCCTCCTCAAGGCGACCCTCCATCCATGCCTCTCGCCAAACGTCAGCCCAGCTTGCCCAAGCACTTGTGCCATGTTTGCAATAAGAACTTCTCTTCATCGTCTGCTCTCCAGATCCATATGCGGACCCATACTGGAGACAAGCCGTTCCGATGTTCCATCTGCCTCAAAGCTTTCACCACCAAAGGAAACCTCAAGGTTCACATGGGCACTCATATGTGGAGCAACGGAGCATCTCGAAGAGGGAGGAGAATGTCCTTAGAAATCCCTCCTCTTCCAAAGGACTCGGAGTTCCTCCAGAGAAGGCCAGATTTCTTCTACCCATACCTCCCGGCGCCGTTCCTTAATGGTATCCATCAAAAGTTGACGGAGATGCCGATGAGCGGAAGCGGAGGAGGACACAACGGAATGATGAGCTACTGCGGGTTCCCCGGTGAACTGAAAGGGGAGCCGAGATCTCCGGAAAAGCCTCAACACCCGGCCTCGACTCCTCCCTCGATCTGGGACCTCCACCTCAAGCAAGAGAGCCACCACACAGACGAGCCTTCCCCGCCTCCCAACATGCCTCCGCCTCGTGGTGAAGGACTCGCAGCATGA
Protein Sequence: MEQKSPRIGESCSGSEDEGGSGQVICPQCQTDFQSYAELAEHVKDCAGKSCPSPGSIVSDDEYEGEKRQEEVRRQRQDAENNNSVEEDDGDVGFPLGHVTLEALQNTKVAVAQFAATAMANNADNPAALQELAVLQSTLYTLQHQQMMQLNLIQQLQQQLQITRPKEGSPSSPPPISGPSRTPTPVRQDIPPTPPTSQSLPPSLSTPAPPKTESSPPIPPPVSLPPCSISSSFASSIITNLDPPPSPSEPNTLEMLQKRAQEVLDNASQGLLASNLADELAFRKNGGKGSLSPYDSKTGGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHSAKFPHIKMNPNPIPEHLDKYHPPLLAQMGAHQSLPPGPPHPPYSGGPQFPPSGLPLYRPPPPHDLALPPHPRPPLDSLNKPILPLPVFGPQEMPENLSKSSPDRYKEELRSNADTEEERLSPKQEPKQEMMENERYPSPSPYDDCSLDSKYTSEEIPGERDSPGLDKNEDSQQDQPENLSNKSTSELGHFSFTSDTRLPPPVHFPEIVSPTSSTSSGSVHRGFLSSSQEPDPIKDPAIYSSLLPRPGSTDNSWESLIEITKTSETHKLQQLVDNIENKMTDPNQCIICHRVLSCKSALQMHYRTHTGERPFKCRICGRSFTTKGNLKTHMGVHRVKPPMRMLHQCPVCHKKFTNSLVLQQHIRLHTGEPTDLTPEQIQAAEIRDFIPQVPPSSEPHFRPFQFPQNLNLPRDPPSLPGLDLPPRSPSPMYNPQEEDKSDYLEESRASSVSPISDAAFSTSITALENQVRTITTTASHHTQSKFAEDSVEDLSSNKDHITVNGEKSPGSRGLDSPSGSEGPLTPSPLHHLSNSALHMHRHPTSPSGASESSSLGALDLTPRSGGPPPGLFSSFGIMPPGSMSSSSPLITSALSSLTSSVLTTTAFNPLGLAVGPPGRGNTTCNLCFKTFACHSALEIHYRSHTKERPFKCTICDRGFSTKGNMKQHMLTHKIRDMPAHLFEQKNGSSSSGMSAGTCTAGGPHQPPREQIQSQQSQTLPQPPTQTPPQLPIRPPQQPTPPQQQSLPPTNPVLPPTPTHQQQSQQTQQMPPQPPQHLMSDDRPSGELSPIPPPHHHKPEIGVKRSPPQGDPPSMPLAKRQPSLPKHLCHVCNKNFSSSSALQIHMRTHTGDKPFRCSICLKAFTTKGNLKVHMGTHMWSNGASRRGRRMSLEIPPLPKDSEFLQRRPDFFYPYLPAPFLNGIHQKLTEMPMSGSGGGHNGMMSYCGFPGELKGEPRSPEKPQHPASTPPSIWDLHLKQESHHTDEPSPPPNMPPPRGEGLAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00340075;
90% Identity: -
80% Identity: -