Olae002542.1
Basic Information
- Insect
- Orius laevigatus
- Gene Symbol
- -
- Assembly
- GCA_018703685.1
- Location
- JAGWEN010000707.1:44978-49047[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.0058 0.35 11.4 1.5 2 23 64 85 63 85 0.96 2 28 0.0012 0.073 13.6 0.9 1 23 106 129 106 129 0.97 3 28 0.001 0.06 13.8 0.8 2 23 136 158 135 158 0.96 4 28 0.028 1.7 9.3 0.0 2 23 203 225 202 225 0.94 5 28 1.4 82 4.0 0.6 3 23 233 254 232 254 0.94 6 28 3.9 2.4e+02 2.5 3.5 1 23 264 286 264 287 0.95 7 28 0.00034 0.021 15.3 0.9 3 23 320 340 318 340 0.95 8 28 2 1.2e+02 3.4 0.1 1 23 349 372 349 372 0.82 9 28 0.074 4.5 7.9 0.5 2 23 379 402 378 402 0.84 10 28 0.84 51 4.6 0.4 2 23 411 433 408 433 0.85 11 28 0.099 6 7.6 0.0 1 23 439 462 439 462 0.94 12 28 0.00072 0.043 14.3 2.1 1 23 470 492 470 492 0.97 13 28 0.00059 0.036 14.6 0.4 2 23 537 559 536 559 0.94 14 28 0.00016 0.0095 16.4 1.1 2 23 566 588 565 588 0.95 15 28 0.0014 0.085 13.4 1.6 1 21 593 613 593 614 0.94 16 28 5.4e-06 0.00033 21.0 2.5 1 23 623 646 623 646 0.97 17 28 0.066 4 8.1 1.9 1 23 649 672 649 672 0.97 18 28 0.00081 0.049 14.1 4.9 2 23 679 700 678 701 0.94 19 28 0.23 14 6.4 6.1 1 23 708 730 708 731 0.95 20 28 1.4 86 3.9 0.7 3 23 739 760 737 760 0.91 21 28 0.089 5.4 7.7 3.1 2 21 769 788 769 790 0.94 22 28 0.0048 0.29 11.7 0.3 1 23 795 817 795 817 0.97 23 28 0.015 0.93 10.1 0.1 1 23 843 865 843 865 0.97 24 28 0.048 2.9 8.6 0.7 2 23 887 909 886 909 0.94 25 28 1.1 64 4.3 0.3 2 23 916 938 915 938 0.90 26 28 0.0042 0.26 11.9 0.2 2 23 1018 1039 1018 1039 0.97 27 28 0.0042 0.26 11.9 0.2 2 23 1106 1127 1106 1127 0.97 28 28 0.0042 0.26 11.9 0.2 2 23 1194 1215 1194 1215 0.97
Sequence Information
- Coding Sequence
- ATGGACGAAGATATTCTTTCCAGTTCCAGCGACGGTCCTAACCCTGCTGACTTTCTAGAAGCATGCTTGGGTGATTCTCCACGTAGCATTGATCCGAAAGATGAAGAGTCCTTCGACTGCATTAATTCAAAAAGCTCTCTTCCAGTTCATGAAATATGCCACCAGGAGAAAAGCGACCATGAAAGATGGGTGTGTCATATCTGCGACAATTGGTTCTCCAGCCAGGGACATCTTACGCTGCATTCTCGTGTACATAAAGGAGAAAGCGCTACCAGTGCAAAAGTGCTACCGTCTACCTCAAAAGAGATGAAGCTATATCGATGTGACCTCTGCAGAAAATCATATTCGATGGCGAAGCATCTCTGGGGGCATGTAAGCACCGCCCATAGAGGAAACCCCTTGGTCACATGCGGATTTTGCCAAAGAACGTTTTCCTCCATTGCAAACTTAGCAAACCACAAAAAGTCCAAACATAAACTTGAAAGCAATGAAGATGATGAGGACAGCGAAGAGAGTCCGAAAAAGATGAAAATTGAGAAAGAAACTGGAAGTGATGAAAGCGACAAAGAAAACGATTTTGCGATGGTGGGCCATGAGGCAATGCTGCCTTGCGAACTTTGTGTACGCGAGTTCAATGACAGGCCCAGTCTTTGGCTCCATATCCTCTATTCGCATAAAGAAGAAGCCTCAAGATCGTGCGGTATATGCCTCAAAATATGCGATGACTTTGAAAGTTTGTCTGAGCATGTGGAAAAGAGCCATCCTCGAGATAAAACCGAGCAGAGGCGATACAGCTGCCAGATTTGTTCTCGTCAGCATGATTCCAGGCCCAAGTTACTCAAGCATGCCAAAATCCACCATCTTGTCGATGAAGATGGTAAAGTCGTCGAACCGGATATCATGATTGTCAATAACAGCGAGTTCTACAAAGTGAAAACGAGCAGCGATGTGTCTAATTGTCAAATATGCTTTAAAAGTTTTGACGACGAATCGAAATTAGAGAGGCACAGAAGCGCCCACCAAAGCTCATACGATAACGTTCCCTTTGTCTGCGAAATTTGCGGTTTGTCGGGCTTATCAAGGTCGGAAAGTTGGAAGCATATGGCATCGCAGCATTCTGGAGATCCGAATATCACATGCCAAGTCGATGTATGCGGTAAAGTATTTTCGACGAGCGCACTCAAAAAAGGACATGAAACTCACCATGATTTGCAAGGCAAGTATCCATGCACGTGTGAAATATGCGGAAAATTGTGGCCTGGGAAGACCCAATTTTTTAAACACGTTATGGCCGTACATCCTCAATATTTACCATTTATATGCGGCGTTTGCCTTAAAGTGTTCGGCGACGTTGCTTTCCTAGCAAAGCATGTTCAAGAGCTTCATATGCCGTTGCAAGGAAAAAACTTTTGCTGCACCATTTGCGGTCGGGCGTATTCGAAAAGTTCAAGGATGATACGCCATCGAGAAATCCATTATGTGAGCAAACCTGAAATTCCTGCGGAACAACTTGAGCGGAAATTGACATGCGATTTGTGCGACGGGGAAGTTGAATATGAAGATTTTGAATCTTTGGGCAAGCATAGGGTTCAAAAACATCAAGTCATGCCGTGCGATTTATGCCCCAAATATTACGGTCGGAATTCTCATTTATGGAAGCACGTCAACAACATACACAAAGGCCATCCGGACATAACATGCTCAACTTGTGGAATAACATCGGCTTCCAAATCTCATCTTACATCTCACATGGCTAAATACCACAAAAAAGACATCCATTCGTGTGAAAAATGCAATAAAGTTTTCCCCGAAAAGGCTCTTTTGAAAGAACATCGAAAGCATTGCGATGCGCCTTCTGAAGGAGAATACGACTGCGATCGATGTTCTAAATCTTTCTCCGATCCAAATTTGCTTTGCAAACACATAAGGACATCACATATGACCTACATGTGCGAAATATGCTTCACCAAAGTCGATTCGAGGACCGAACTTTACCACCACGTTCGCCAAAATCACAGCGACCATCCTGACGTCAAATGCTGCGTCTGTGACAAAATATTCAGAACCAAACTAGACCTGTCGCGCCATCAAAAAGACCATCATGAATCCTACCCGCAGTCACACACGTGCGTCTTCTGCGCCGAAATCCTCTCCAGCAAAATCAAGCTGAAACATCATATGAGAAAGCATCATGGAAAGTTGACCAAATGTCTTTGCTCGATTTGTCTCAAAGCTCTTCCTAGCTTTCAAGATTTGAAAACCCACGTGGAAGCCTTCCATAAGAAAGCGTTGGCACGTCCTAATGTATGCCCGGTCTGCGTAAAAACGTGCGCGAACAAAAACAAACTAATGGAGCACATCAAATGTCACAGCAAGTATTTCCATCCTTGTAAAGTATGCCTTGGTATATTTGCTTCAAAAGATGATTTAAACGTGCATTTGAAAAACCATGAAGATGCTCAAGTTGGCCTCAAAAGGAAAATTGACGATACAGAAACATCATCTGCCAAAAAGCCGAAAACCGAATTCCCTTGTGATGTATGTCAAGCAACTTTTATTTTCATGGACGACTATCTGAACCACCAAGAAAGCCATAAAGAGCCCGAAAACGTCGAAAACTCACCCAAAATTCGAGTCTGCAACGATTTCATTCCTATCCATTGCGGAGTCTGCGGAAAAATTTGGCCGACGAACCGACACCTGTGGCAACACTTGATACGTTATCATAGCCTCCAGGCGGCAACAACATGCGGAATTTGTCTTAAAATTTGTGAAAACTACATCGAATTGAGTAACCATTTGGTTTTGGAGCATTCCAACTTTTTCGACCGCGACGGAACCAAGTTGGCGTGCAGAGTCTGCGGTAGATGTCACGACTCGAGGGCGAAACTGAACAGCCACTGTATGATCCACGTGGGTCACGAAGAAAGGGCTAAATTAAGCTCGCACTTTTGCCTTCTTTGCCAGATAACGTTTCCGCTCTTCAAACTTTTCTGCGAACACAACGAAGAAGTACACGGTTTATCGGAAAGCGCTGAAAAAGTCGAAAATTCTTGCGACGTTTGCTCATTGGTGTTCGACACCGAGCAAGGATTGATCGACCACAAACGAACTCATACTCAGGAAGAAGATTCTGAAGAAATGGAAGAAGAAGAGATCGAAGAATGGGAAGAAGTTGAAGAAGAAAACGACTCTGGAACTTCAGGTTCCGAAAAGTCTTCGAACCCTGCAGGAAACGAAGGTGAAGTGGAAGAAAGCATCGTTGAAGAAGAAGAACCTCGCGCGATCGAGGAAAGCGCTGAAAAAGTCGAAAATTCTTGCGACGTTTGCTCATTGGTGTTCGACACCGAGCAAGGATTGATCGACCACAAACGAACTCATACTCAAGAAGAAGATTCTGAAGAAATGGAAGAAGAAGAGATCGAAGAATGGGAAGAAGTTGAAGAAGAAAGCGACTCTGGAACTTCAGGTTCCGAAAAGTCTTCGGACCCTTCAGGAAACGAAGGTGAAGTGGAAGAAAGCATCGTTGAAGAAGAAGAACCTCGCGCGATCGAGGAAAGCTCTGAAAAAGTCGAAAATTCTTGCGACGTTTGCTCATTGGTGTTCGACACCGAGCAAGGATTGATCGACCACAAACGAACTCATACTCAAGAAGAAGATTCTGAAGAAATGGAAGAAGAAGAGATCGAAGAATGGGAAGAAGTTGAAGAAGAAAGCGACTCTGGAACTTCAGGTTCCGAAAAGTCTTCGAACCCTGCAAGAAACGAAGGTGAAGTGGAAGAAAGCATCGTTGAAGAAGAAGAACCTCGCGCCATCGAGGTTTTTGTTTACGAAGACCTAAACCTCGAAGTAATCAAAGTTGATATACCAGACGAACAAAAAGACTGA
- Protein Sequence
- MDEDILSSSSDGPNPADFLEACLGDSPRSIDPKDEESFDCINSKSSLPVHEICHQEKSDHERWVCHICDNWFSSQGHLTLHSRVHKGESATSAKVLPSTSKEMKLYRCDLCRKSYSMAKHLWGHVSTAHRGNPLVTCGFCQRTFSSIANLANHKKSKHKLESNEDDEDSEESPKKMKIEKETGSDESDKENDFAMVGHEAMLPCELCVREFNDRPSLWLHILYSHKEEASRSCGICLKICDDFESLSEHVEKSHPRDKTEQRRYSCQICSRQHDSRPKLLKHAKIHHLVDEDGKVVEPDIMIVNNSEFYKVKTSSDVSNCQICFKSFDDESKLERHRSAHQSSYDNVPFVCEICGLSGLSRSESWKHMASQHSGDPNITCQVDVCGKVFSTSALKKGHETHHDLQGKYPCTCEICGKLWPGKTQFFKHVMAVHPQYLPFICGVCLKVFGDVAFLAKHVQELHMPLQGKNFCCTICGRAYSKSSRMIRHREIHYVSKPEIPAEQLERKLTCDLCDGEVEYEDFESLGKHRVQKHQVMPCDLCPKYYGRNSHLWKHVNNIHKGHPDITCSTCGITSASKSHLTSHMAKYHKKDIHSCEKCNKVFPEKALLKEHRKHCDAPSEGEYDCDRCSKSFSDPNLLCKHIRTSHMTYMCEICFTKVDSRTELYHHVRQNHSDHPDVKCCVCDKIFRTKLDLSRHQKDHHESYPQSHTCVFCAEILSSKIKLKHHMRKHHGKLTKCLCSICLKALPSFQDLKTHVEAFHKKALARPNVCPVCVKTCANKNKLMEHIKCHSKYFHPCKVCLGIFASKDDLNVHLKNHEDAQVGLKRKIDDTETSSAKKPKTEFPCDVCQATFIFMDDYLNHQESHKEPENVENSPKIRVCNDFIPIHCGVCGKIWPTNRHLWQHLIRYHSLQAATTCGICLKICENYIELSNHLVLEHSNFFDRDGTKLACRVCGRCHDSRAKLNSHCMIHVGHEERAKLSSHFCLLCQITFPLFKLFCEHNEEVHGLSESAEKVENSCDVCSLVFDTEQGLIDHKRTHTQEEDSEEMEEEEIEEWEEVEEENDSGTSGSEKSSNPAGNEGEVEESIVEEEEPRAIEESAEKVENSCDVCSLVFDTEQGLIDHKRTHTQEEDSEEMEEEEIEEWEEVEEESDSGTSGSEKSSDPSGNEGEVEESIVEEEEPRAIEESSEKVENSCDVCSLVFDTEQGLIDHKRTHTQEEDSEEMEEEEIEEWEEVEEESDSGTSGSEKSSNPARNEGEVEESIVEEEEPRAIEVFVYEDLNLEVIKVDIPDEQKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -