Olae013536.1
Basic Information
- Insect
- Orius laevigatus
- Gene Symbol
- -
- Assembly
- GCA_018703685.1
- Location
- JAGWEN010000060.1:280432-283639[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00067 0.04 14.4 0.6 1 23 196 218 196 218 0.98 2 13 0.0083 0.5 10.9 0.6 1 21 222 242 222 246 0.92 3 13 9.5 5.8e+02 1.3 0.6 6 23 260 277 258 277 0.87 4 13 0.075 4.5 7.9 2.4 1 21 281 301 281 302 0.92 5 13 0.00024 0.014 15.8 1.3 1 23 309 332 309 332 0.98 6 13 3e-05 0.0018 18.6 3.4 1 23 339 361 339 361 0.98 7 13 3.7e-05 0.0022 18.3 0.4 1 19 367 385 367 389 0.96 8 13 0.0001 0.0061 17.0 6.9 1 21 395 415 395 417 0.96 9 13 1.5e-07 9.1e-06 25.9 3.4 1 23 423 445 423 445 0.99 10 13 5.7e-06 0.00035 20.9 1.0 1 23 451 473 451 473 0.96 11 13 3.6e-05 0.0022 18.4 7.3 1 23 479 501 479 501 0.99 12 13 4.3e-06 0.00026 21.3 1.7 1 23 507 529 507 529 0.97 13 13 5.3e-05 0.0032 17.8 2.3 1 23 535 557 535 557 0.98
Sequence Information
- Coding Sequence
- ATGGCGCTTGGGTTCCAGTTCGCAGAATTTGACCAATTTTTTTTATGCAGACTTTGCTGTCAAGAAAATTACAAACACGGCTTGAATTTAAATACGGTAAACGCAATCGGGAAACCTCTTACCGAATTAATTAATCAGCATTTACCATTCAAGGTTAACTATGACCCAAGATTGCCTCCTAACATTTGCGCAGGATGTCTCCTTCAAATTCAAGCAATCGTTGAGTTCCGAAATTTACTAGATTCCGGCCAAAAAAAAATCCTAGAGCTATTTCCAATTCAGGATGAACTTGACAGCAACGGAGTTCCCAAACGGAAACGTGGTCGACCGAGAAAAGCTCCTCCGTCCGACAATCCACCAGAGTCGCCACCAAAACCAGAAAACGTACAAAAGGCTGAAGAAACGAATGAACATGAGATAGGGAAAAGAAGAAGAAAAGCCCCTGCTATATTTGATGGCACTGTTTTGGGAAAAGAGCTTGAAAAAGCTTTAGAAGAAGAAGGCATCGTTGATGAGGATGTTCAGAAACCATTGAATGGTAATTTAATCAAAAATCCAACTAAAGAAGCAGAAGTACTGGCCGACTTCAAGTGTGATGTCTGCGAGCAAGATTTTAGACAAGAAAACGAATTCCTTGTCCACCAATCTTCACATAAAGTTCTCTTCACTTGTTCGACTTGCAGAGAAAATTTTACATCATTTCCAACTTTGGAAACACATCAAGAAGAGACAGGTCATACAGGGAATGATCTCACATACATCTCTCAAAAATGTTTCTGCGGCGAGACATACAGCTCCGAAGAACTTCATGGGCATATCGAGCAGAAACATCCGAAAGTGTTCAAATGTTCGACTTGCCCAGAAACTTTCCGCTTCGATGTCGGTTTGCATGCCCATAAATGTTCGCAAGCAGAAAGCGGGCAATTCCCATGCGATATCTGCGGCGTAGTTTTAAGACATTCCAACTCCTTAACTTACCACAAGCGGACAAAACATGGCCCACTTGATAAAACATTCGAATGTTTGAAATGTGATAAAACGTTCAAACACAGATTGTTGTTGCTGCGGCATCAACAAGTTCATTCAACTGACCGTCCATTTAAGTGCAACTTGTGCGACGCTTCTTTTAAAACAAAGTCAGCCCTTAACGCCCACGATGTAGTTCACACCAAAGTCAAAAACTTCCAGTGCCACATTTGCGACCAGACTTTTTCGCATCTTTCTTCCCTCAAGTTACATCTCAGGTGTCACACAGGGAAAAAACCATTTCAGTGTGACTATTGCCAAAAGAGTTTTTATCAAAAAGGAAATCTCAAAGAACATTATAGAACCCACACTCAAGAAAAGCCATATTTATGCAACCTGTGCGACCGTGGGTTTAAAACGTCTTCTCAAGTTAAATCGCATATGAAAATTCATTTAGGCGATAAACCATTTAAGTGTGAGCATTGCCATAAAGCTTTTCCATACAAATTCTCGCTCAAGAACCACTTAAAGCGGCATGAAGGAGGGCGACCTTTTATGTGTGACATTTGCTCCAAAGAATTCCGCGATCGTTGGTCATTGAAGAAACATCTGAGGTTCCACACAGGAGAAAAGCCTTACAAGTGCCCATTCTGTGCCAAAGCCTTTTCTGATTGCTCAAACATGATCAAACATAAAATGCTCCATTTGAAACATGTAAATGCCCAACGACCAGCCGAAGATGAAAACCCGAACTTTGACATCTGGAATGTTTTACCGGGAGATGAAGGGTTAAGCAAAGATAAAAATGTTTTATCGCAAATTCTACTCATATATCCTGAAGATGAAAATCAAGAACTTACTGAACAGTTTTCTTTGAATAAAAAAGATGATATTCAAAACAAAGAATTAGAGGATGGTAATCAAATGAACACGATGATGCAAGTCACAGATGAACATGGAAATCCACTCAGTTTCACTACTCAAGAAGGGACAACTCTTCAGCTTACAATTGATGGAGAATCGCTTCAGTTGACAACTAGCGATGGAAGCACAATTCCTGTTCAAATATCAACCGAAAATGATGACGTCCTCCAATCCATGATATTGCCGTCCATTGAAAACGAGGCAGATGAAGTCGATCAAAATGTGGAAGCCCTTGAATTCGTCACCGACCATCAAGATGTCCAATTGTTGGCTGGTTTGACCGAATCCTCACTCGACTTTCTTCCTTTAACCTAG
- Protein Sequence
- MALGFQFAEFDQFFLCRLCCQENYKHGLNLNTVNAIGKPLTELINQHLPFKVNYDPRLPPNICAGCLLQIQAIVEFRNLLDSGQKKILELFPIQDELDSNGVPKRKRGRPRKAPPSDNPPESPPKPENVQKAEETNEHEIGKRRRKAPAIFDGTVLGKELEKALEEEGIVDEDVQKPLNGNLIKNPTKEAEVLADFKCDVCEQDFRQENEFLVHQSSHKVLFTCSTCRENFTSFPTLETHQEETGHTGNDLTYISQKCFCGETYSSEELHGHIEQKHPKVFKCSTCPETFRFDVGLHAHKCSQAESGQFPCDICGVVLRHSNSLTYHKRTKHGPLDKTFECLKCDKTFKHRLLLLRHQQVHSTDRPFKCNLCDASFKTKSALNAHDVVHTKVKNFQCHICDQTFSHLSSLKLHLRCHTGKKPFQCDYCQKSFYQKGNLKEHYRTHTQEKPYLCNLCDRGFKTSSQVKSHMKIHLGDKPFKCEHCHKAFPYKFSLKNHLKRHEGGRPFMCDICSKEFRDRWSLKKHLRFHTGEKPYKCPFCAKAFSDCSNMIKHKMLHLKHVNAQRPAEDENPNFDIWNVLPGDEGLSKDKNVLSQILLIYPEDENQELTEQFSLNKKDDIQNKELEDGNQMNTMMQVTDEHGNPLSFTTQEGTTLQLTIDGESLQLTTSDGSTIPVQISTENDDVLQSMILPSIENEADEVDQNVEALEFVTDHQDVQLLAGLTESSLDFLPLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -