Olae003836.1
Basic Information
- Insect
- Orius laevigatus
- Gene Symbol
- ZFX
- Assembly
- GCA_018703685.1
- Location
- JAGWEN010001753.1:916-5980[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2e-05 0.0012 19.2 1.1 3 23 161 181 160 181 0.97 2 13 0.024 1.5 9.5 0.3 1 23 187 210 187 210 0.96 3 13 0.0068 0.41 11.2 1.0 1 23 216 238 216 238 0.93 4 13 0.011 0.66 10.6 0.6 1 23 244 268 244 268 0.93 5 13 6.2e-08 3.8e-06 27.1 0.5 1 23 274 296 274 296 0.98 6 13 2e-06 0.00012 22.3 0.3 1 23 302 324 302 324 0.95 7 13 0.0012 0.07 13.6 3.2 1 23 330 352 330 352 0.97 8 13 2.2e-05 0.0013 19.1 4.0 1 23 358 380 358 381 0.94 9 13 0.00042 0.025 15.0 3.5 1 23 437 459 437 459 0.97 10 13 0.11 6.6 7.4 3.9 1 23 465 487 465 487 0.97 11 13 6.4e-09 3.9e-07 30.2 1.0 1 23 493 515 493 515 0.97 12 13 7e-05 0.0042 17.5 1.2 2 23 530 551 530 551 0.98 13 13 0.0015 0.093 13.2 3.4 1 23 557 580 557 580 0.98
Sequence Information
- Coding Sequence
- ATGCTCAAGGGCGAACACTTCCTCGGCCGTGTCGTCGACGACACCCTCGACCCCGGCGAGCCCCAAACCCCGGCCTTCAACCTCAACGAGATTTGTCGCCTCTGCAGGAACTCGAAAGGCGTCATGTCTTACATTTTCAGCAACGCTGGTCTCGACACTTCATCCTCAGTTTCCCAGAAAATCATGAGCTTCATTAATATCGACATGCAAGAAGGAGATGGTTTGCCGTCATTGATTTGCCACCGTTGCCTCTACCATGTTGAGCAAATTCACGAATTTAAAATTCAGTGTGAACAATCAGATGCACTTCTGCGTCAAATTCTTTCATTCGGGACCGAGTTTAATGGTTTGCCGCAGATAAAGAATGAAAAATTAGAAAACGACTCGGATGACGACTACCAGATTAAAAACGAGCAAGTGAGCGACGACGAAATGAACGGCGATGACGTCGACGATAATGAATCTGATGATGAAAACAACTGTCCGACGTGCAATAAACATTTTGATGATGCCGACAAGCTTGAAAGACACGTCAAAATCCACTCGCAGGATGGCCCATTTCCTTGTGACTACTGCGAAGAGACGACGCTTGATAAAGCAAGTCTGCGACTTCATTGGCGACAAAAGCATGCGGGAACCAACTGCCACGTGTGTCAAACGTGCGGCGCCGCTTTTCCTATCAGAGAGCATTTAATGAAGCACAACGTCCGCCATGACAAAATGAAGCCGTATCGCTGTAATGAGCCATCATGTATGAAAGGCTTCTCGTATAGATCGGACCTCAGGAAGCATTCAGTCATCCACACCGGCATTCGGCCTTACGTTTGTCCCATTTGCTTCAAAGCATTTACACGGAGCACGAATTTAAACAAACATGCTCGTGTCCATACAGGGAAGAAGCCATTTACGTGCGATGACTGCGGCAAAATGTTCGCATCGCGCGGCGATCTCATGCGACACTCTTTCATCCACACGGGCGTCAAACCGTACTCATGTCCTGTCTGCTGTCTTTCCTTCAACCGCAAAGACAAACTGACTCGCCATGAAAAACTCCACAACGAGCAAAGAGCTCACATGTGCAGCGTCTGCCCGACTTCTTTCAACCGCAAAGAAGAACTCACCAAGCACATCCAATTTCACCATTTTCTTCCTACCACGCCGGACTATGATGATTCAGCTGAAGGGGAAAATGACAAAAAGAGGAATTCAGATGAGAATGATGGTGATCATTTCGATTTATCCGAAAAAGGTGAAGATACTGAAGACATGGTTATAAGTGTGGACCCGATAAACTGGACGGAGACGAAACATCAATGCCAAACGTGTAACCGGACATTTAAAACAGACGAGGAGCTCTCCAAACATAAAGCGAGTCATGAAAAAAGCCGTAACTTCATCTGCGAAGTTTGCTGTAAAGGTTTCCACCAAAGGCGGGAACTTGTTCGGCATTCGCTGACGCACACAGGGTTCAAGCCGTTCGCATGCGAATTATGCGGAAAAGCCTTCTCGCGGAGAGACAAACTCACGCGCCACATGAGGACCCATTCGGCGATCAGAAAACCGGCGGACGACAACAAAACTCCCCCGACGTGCGAAATCTGCTTTAAAGTTCTTTCCTCGCAGCACGAACTGTCTCGACACATCATCACTCATTCGGCCTTCAGGCCCTACCAATGTAGCCTTTGCGCCTCTTCCTATTGCCGTAAAGACAAACTAGTAAAACACATCAAAAAAATGCATTCTGAATCACAAAACGGTGTTTAA
- Protein Sequence
- MLKGEHFLGRVVDDTLDPGEPQTPAFNLNEICRLCRNSKGVMSYIFSNAGLDTSSSVSQKIMSFINIDMQEGDGLPSLICHRCLYHVEQIHEFKIQCEQSDALLRQILSFGTEFNGLPQIKNEKLENDSDDDYQIKNEQVSDDEMNGDDVDDNESDDENNCPTCNKHFDDADKLERHVKIHSQDGPFPCDYCEETTLDKASLRLHWRQKHAGTNCHVCQTCGAAFPIREHLMKHNVRHDKMKPYRCNEPSCMKGFSYRSDLRKHSVIHTGIRPYVCPICFKAFTRSTNLNKHARVHTGKKPFTCDDCGKMFASRGDLMRHSFIHTGVKPYSCPVCCLSFNRKDKLTRHEKLHNEQRAHMCSVCPTSFNRKEELTKHIQFHHFLPTTPDYDDSAEGENDKKRNSDENDGDHFDLSEKGEDTEDMVISVDPINWTETKHQCQTCNRTFKTDEELSKHKASHEKSRNFICEVCCKGFHQRRELVRHSLTHTGFKPFACELCGKAFSRRDKLTRHMRTHSAIRKPADDNKTPPTCEICFKVLSSQHELSRHIITHSAFRPYQCSLCASSYCRKDKLVKHIKKMHSESQNGV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -