Olae006816.1
Basic Information
- Insect
- Orius laevigatus
- Gene Symbol
- su(Hw)
- Assembly
- GCA_018703685.1
- Location
- JAGWEN010000134.1:48860-52434[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.3 18 6.0 0.2 2 21 89 108 89 109 0.93 2 13 9.5e-06 0.00058 20.2 1.1 1 23 218 241 218 241 0.97 3 13 0.00011 0.0065 16.9 0.5 2 23 247 268 246 268 0.97 4 13 3e-05 0.0018 18.6 1.1 1 19 274 292 274 295 0.95 5 13 3e-07 1.8e-05 24.9 0.3 1 23 306 328 306 328 0.97 6 13 0.0006 0.036 14.5 2.8 1 23 338 360 338 360 0.98 7 13 3.7e-05 0.0022 18.4 1.6 1 23 366 388 366 388 0.99 8 13 9e-06 0.00055 20.3 1.7 1 23 394 416 394 416 0.98 9 13 4.6e-05 0.0028 18.0 6.5 1 23 422 444 422 444 0.94 10 13 5.6e-05 0.0034 17.8 0.7 1 23 456 479 456 479 0.94 11 13 8.3e-07 5e-05 23.5 2.3 1 23 485 507 485 507 0.98 12 13 5.2e-07 3.2e-05 24.2 1.3 1 23 513 535 513 535 0.98 13 13 3.4e-06 0.0002 21.6 2.0 2 23 542 564 542 564 0.96
Sequence Information
- Coding Sequence
- ATGAATTCGACTCGCGCTAAAACTGAAAGGGCACCACTTAAGCCCAAAAAGGGTGAAGAAACGAATAACGTCGTAGAGAAAGATGAAGTCGAAGAAGAAGTAGCTGAAGAAGCGAAGCCGAAGGCGAAAAGGTCGAGGGTCGCTAAACCAAAAGCAAATCAAGGAGCCACCAAGAAAGGGCGAGGTAAAAAGTCGACTGTAGAAGATAAAAAGGAGCCCGAAAGTGCAAGCAATGATGAAGAGAACAAAGTCGTCCAGAAGCCCAAGTGCACTTATTGCTCTCGTGAGCTTAAATCTGCTGGGGGAGTTAAAATTCACGAGCGAAAATGTAAAATGAAACCGGCAGAATTAAATGAAGAAAGCGAAAAAAACGCAAACGGGACCGATTCTGACTCATCTCCCGTTAAATCGAAAAAAGACGTCCGAAGTCTCCTGAACGATGCAGCGAATGATTTGCTCAAAAGCAAAAACTCGATGAAATCCGAAGAGGATAGTGAAGGCGAAGAAGATGGCGAAGAAGGTGTAGAAGAAGAGGAAGACGACGATATCGGTGATGATGAATCAGACATTCTTGATAATCCAAATAACGAAGATGACGATAACTGTTATTGCTGTGGCGAGCACAAAACAACAGCACACATTTCTGGCGAGTTTGAATGTTACGATTGTAAAAAGTATTTTGTCCTAAAATCTTCGCTTGAACGTCATATAAAGATGATACATCAAGGAGACAGCCTCAAGTGCCCTCAATGTGGCGCCAGGTGTCCTGACAAAGGAACCTTAGCTAGACACTTGTACACTCACACAGGCTTGAAACCATATTCATGTCCTGTATGCAAACAAGAATTTAGTCGGAAGTATCATTTGGTGAGGCACAACATGCAGACGGGTTGCGATGGAAAAGAAAAACCTGTTTTCCCTTGTCAGGTTTGTGGGCGTGGGTTTAATCGGAAAGATAACCTAAGAGAGCATCTGAGGGCTCATGCGGGGCAGACGAAAAGAAAAAGACTTTTTTCATGTGACTTCTGCGGGATGACATTTTGTGGCACTAACCTTCTTCAAGCCCATAAAAAAACTCATGTTGGCGAGAAGCATTATTCTTGCGATTTTTGCGTCAAAAAGTTCCCGACAAGTGGAGCCATGAAAAAACACAGACGAACCCACACTGGGGAACGACCGTACGAATGTGATACTTGCCACAAGAGATTCGCCGCCAAAGAAACTTTGAACAGGCATGTTCGGATCCATACCGGCTACAAGCCTCACTGTTGCAATTACTGCGGGAAAAGGTTCATCCAGTCTTCCCAACTTCGATCGCATTTGTTTTACCATACTGGGCAAAGCGTTTTACAGCAATCTGAAGCGTTTGTTTGTGAACTCTGTGGTAAGAAGTTTAACAGACGGGCGCGGCTGAATGAGCACGTCAAATTCGTTCATCTGGGAGCGAAGCCATTTGAGTGTTACCATTGTAACAAAACGTTTATCAGAAAGGAGGATTTGAACAGGCATCTGATCATTCATTCTGGTGTCAAAGCACACCAGTGCCCTATTTGTAGCAAATCATTTGCTATGAAATCTTCACTTAAGGTTCACCTTTTAACTCACACCAAAGAGCCGCCACGTTCGTGCGATGAATGCGGACGGGCTTTTATAAGACAAGACTGCCTCCTCCGACATATGAGAAACAAGCATCGAGACATGCTCGAGGAGATCAGGTCGGAAGCGCAGAAGAAAAAACTTCAGCAGCAACTTCTCCAAGTAGCGGCAGAAGCGAGTATCGTCGAAGGGTTGGAAGATAGAGAGCAACTAGACGAAAAAGGCCTTACAGACGCCGTTCGCGAACTTCTTTCTTTATTAGTCGACGAGGAAACTCTGCGAGGTCTCGGATGGCCAGACGCTGGAGTCGAGACACTTCTCGAAGCCGTCATCAAAAGATGCGGACACGAACCCTCCCCTTCAACGATCGCCCATCACGAACGCCTTCGTCACAACATCAAACTTCTATTCACAGTCGTCATCGACGATTCAGCGGTCAAGGCTCTCCTCAACAACCAATCCGTCGACGAAGTAATCCTCCATGTCTTAAGATTAGCCAAATCATAG
- Protein Sequence
- MNSTRAKTERAPLKPKKGEETNNVVEKDEVEEEVAEEAKPKAKRSRVAKPKANQGATKKGRGKKSTVEDKKEPESASNDEENKVVQKPKCTYCSRELKSAGGVKIHERKCKMKPAELNEESEKNANGTDSDSSPVKSKKDVRSLLNDAANDLLKSKNSMKSEEDSEGEEDGEEGVEEEEDDDIGDDESDILDNPNNEDDDNCYCCGEHKTTAHISGEFECYDCKKYFVLKSSLERHIKMIHQGDSLKCPQCGARCPDKGTLARHLYTHTGLKPYSCPVCKQEFSRKYHLVRHNMQTGCDGKEKPVFPCQVCGRGFNRKDNLREHLRAHAGQTKRKRLFSCDFCGMTFCGTNLLQAHKKTHVGEKHYSCDFCVKKFPTSGAMKKHRRTHTGERPYECDTCHKRFAAKETLNRHVRIHTGYKPHCCNYCGKRFIQSSQLRSHLFYHTGQSVLQQSEAFVCELCGKKFNRRARLNEHVKFVHLGAKPFECYHCNKTFIRKEDLNRHLIIHSGVKAHQCPICSKSFAMKSSLKVHLLTHTKEPPRSCDECGRAFIRQDCLLRHMRNKHRDMLEEIRSEAQKKKLQQQLLQVAAEASIVEGLEDREQLDEKGLTDAVRELLSLLVDEETLRGLGWPDAGVETLLEAVIKRCGHEPSPSTIAHHERLRHNIKLLFTVVIDDSAVKALLNNQSVDEVILHVLRLAKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -