Basic Information

Insect: Orius laevigatus
Gene Symbol: -
Assembly: GCA_018703685.1
Location: JAGWEN010000488.1:16073-18709[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 0.0017 0.1 13.1 4.1 1 23 74 95 74 95 0.96

2 26 1.5e-06 8.8e-05 22.8 0.5 1 23 101 123 101 123 0.96

3 26 0.00026 0.016 15.7 0.9 1 23 128 150 128 150 0.98

4 26 0.00039 0.024 15.1 3.4 1 23 156 178 156 178 0.98

5 26 2.8e-06 0.00017 21.9 0.7 2 23 236 257 236 257 0.98

6 26 4.9e-05 0.0029 18.0 1.8 1 23 263 285 263 285 0.98

7 26 0.00011 0.0069 16.8 0.0 1 23 291 313 291 313 0.97

8 26 1.3e-05 0.0008 19.8 2.9 1 23 318 340 318 340 0.98

9 26 0.02 1.2 9.8 0.2 5 23 349 367 348 367 0.95

10 26 1.7e-05 0.001 19.4 0.8 1 23 386 408 386 408 0.98

11 26 0.00019 0.012 16.1 1.2 1 23 414 436 414 436 0.93

12 26 4.8e-05 0.0029 18.0 0.1 1 23 442 464 442 464 0.97

13 26 1.5e-06 9.1e-05 22.7 1.9 1 23 468 490 468 490 0.97

14 26 3.7e-05 0.0022 18.4 0.7 1 23 496 518 496 518 0.98

15 26 0.00046 0.028 14.9 1.0 1 23 523 545 523 545 0.98

16 26 7e-05 0.0042 17.5 1.9 1 23 551 573 551 573 0.98

17 26 3.5e-05 0.0021 18.4 1.2 1 23 578 600 578 600 0.98

18 26 1.3e-05 0.0008 19.7 5.1 1 23 605 627 605 627 0.98

19 26 0.018 1.1 9.9 0.0 1 23 633 655 633 655 0.92

20 26 4.7e-05 0.0028 18.0 2.0 1 23 659 681 659 681 0.97

21 26 1.3e-06 7.9e-05 22.9 0.9 1 23 687 709 687 709 0.98

22 26 0.0017 0.1 13.1 0.4 1 21 715 735 715 737 0.89

23 26 2.6e-05 0.0016 18.8 3.2 1 23 742 764 742 764 0.97

24 26 0.14 8.3 7.1 3.4 1 23 770 792 770 792 0.96

25 26 1.5e-05 0.00089 19.6 1.3 1 23 797 819 797 819 0.98

26 26 2.3e-06 0.00014 22.1 5.6 1 23 825 847 825 847 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	0.0017	0.1	13.1	4.1	1	23	74	95	74	95	0.96
2	26	1.5e-06	8.8e-05	22.8	0.5	1	23	101	123	101	123	0.96
3	26	0.00026	0.016	15.7	0.9	1	23	128	150	128	150	0.98
4	26	0.00039	0.024	15.1	3.4	1	23	156	178	156	178	0.98
5	26	2.8e-06	0.00017	21.9	0.7	2	23	236	257	236	257	0.98
6	26	4.9e-05	0.0029	18.0	1.8	1	23	263	285	263	285	0.98
7	26	0.00011	0.0069	16.8	0.0	1	23	291	313	291	313	0.97
8	26	1.3e-05	0.0008	19.8	2.9	1	23	318	340	318	340	0.98
9	26	0.02	1.2	9.8	0.2	5	23	349	367	348	367	0.95
10	26	1.7e-05	0.001	19.4	0.8	1	23	386	408	386	408	0.98
11	26	0.00019	0.012	16.1	1.2	1	23	414	436	414	436	0.93
12	26	4.8e-05	0.0029	18.0	0.1	1	23	442	464	442	464	0.97
13	26	1.5e-06	9.1e-05	22.7	1.9	1	23	468	490	468	490	0.97
14	26	3.7e-05	0.0022	18.4	0.7	1	23	496	518	496	518	0.98
15	26	0.00046	0.028	14.9	1.0	1	23	523	545	523	545	0.98
16	26	7e-05	0.0042	17.5	1.9	1	23	551	573	551	573	0.98
17	26	3.5e-05	0.0021	18.4	1.2	1	23	578	600	578	600	0.98
18	26	1.3e-05	0.0008	19.7	5.1	1	23	605	627	605	627	0.98
19	26	0.018	1.1	9.9	0.0	1	23	633	655	633	655	0.92
20	26	4.7e-05	0.0028	18.0	2.0	1	23	659	681	659	681	0.97
21	26	1.3e-06	7.9e-05	22.9	0.9	1	23	687	709	687	709	0.98
22	26	0.0017	0.1	13.1	0.4	1	21	715	735	715	737	0.89
23	26	2.6e-05	0.0016	18.8	3.2	1	23	742	764	742	764	0.97
24	26	0.14	8.3	7.1	3.4	1	23	770	792	770	792	0.96
25	26	1.5e-05	0.00089	19.6	1.3	1	23	797	819	797	819	0.98
26	26	2.3e-06	0.00014	22.1	5.6	1	23	825	847	825	847	0.98

Sequence Information

Coding Sequence: ATGGACGAAGAGATTAAAGTTAAAACCGAATTTGACGATGAAGAACAAATAGTGAGGATAAAACAAGAATCCATTTACACAGAAGACTTTAACATCAAAGAAGAATGTATCGACATTGATGAAGAAAGAGAAGACATGATAGAAGTCGAGAAAAGCTTTGGTTTAACGAAAGATCCATTAGAAATCGACAATTTCCAGCCTATTTCGACGAGAAAACGACACGAGTGTGAACTCTGCGGTAAAATGTTCACTCTGACTCATCTAAGAGATCATATGAGTTTCCACAATGGCGAAAAGCTTCACAGTTGTGACGTATGCGGCAAGACGTTCACGTATGCCAGCAATTTGTTGGCCCATAAAGCGATCCATTCTGAGAAACGATTTAGCTGCTCTGTTTGCGCTAAGAAATTCACTGAAGCGCGCTATTTAAGGACTCATGAAAGAGTCCACACTGGAGAAAAGCCATTCAAATGTGAAGTGTGCCATAATTACTATGCACATGCATCTACTTTAAAGAAACATATGGAAATTCACAAGCCCAGGGAATGCAAAACCTCTTCAATTAGTAGAGTTCAGGAAGGAAAGCAAAGCTGTCTTGTATGCCAGAAAAGATTCTTATGTTCTGATAGTTTTCTGGTTCATGTGTGTTCTAATACAGCGGAAAAGAGTCAAGTAGCAGAATCATCTTTGATTGATGTGAAGCCAAAATGTGATGTATGCAATAAAACGTTTTCATCGGAAAACGGTCTTAAGGTTCATATGAAAATCCATACTGGAGAAAAGCCCTTCAGCTGTACATTCTGCGATAAAAAGTTCAACAGAGCTGACAATCTTAAGTTTCATATTAACGTCCATACTGGAGAAAAGCCTTATAGCTGCGAAGTCTGCGAAAAGGCTTTTGGAGATCCTCGCTCTTTGATGGTCCACAGGGCAGTTCATTCAGAAAAGATGCACACTTGCGGCGTCTGCCAGAAGACGTTTTCATTAGCTAGATCGCTGAAGAAACATATGAGCACTCATAGCGATGGGGCAGTTCATTCTGAGAATTGCCAGGAAACGTTCTTAAATTCTGATAGTCTGCAGACTCATATGAGGGCTCATGAGCAAGGGAGTCAATTTGGCCAAAACTTCACTGATTCGGTTGTCCAAGATAAGCATAGCTGTGATGTATGCAATAAAACGTTAGCGTCAGCATATGGTCTTAAAGTCCATATGAAAACCCATACTGGAGAAAAGCCCTTTAGCTGTATATTCTGCAATAAAAAGTTCAACCGAGCGGCCAATCTTAAGTATCACATTAACATCCATACTGGAGAAAAGCCCTACACCTGTGAAATCTGCGATAAAGCTTTTGGAGACCCTCGCTCTCTATCTTCGCACAGTTTAGTCCATTCGCCAGTCCATAGCTGCGATGTTTGCCAAAAAACGTTCACAAAAGCTAAAAATCTTAAAGCCCATATGGCATCCCATACCGGAGAAAAGCCCTTCAGCTGTGAATTCTGCGAGAAAAAGTTCATCTACGCCAGCAACCTTTCGGCCCACAAAGCGACCCATTTTGAGAAGCGATTTACCTGCTCGGTGTGCTCTAAGAAATTCACAGAAGGCCGTGTTTTAAAAATGCATATGAGAATTCACACCGGGGAGAAGCCATACAGCTGCCAATTGTGCGAAAAGAAGTTTACATTCAATAGCTCTTTCAGAGATCACATAGCATCCCATTCAGGAGTCAAGTATAACTGTGAAGTTTGCCAGAAAACTTACTTAAGAGCCAAATCCCTTAAGGTTCATATGAGAACCCATGGAGAGAAGCCCTTTAGCTGTAAATTCTGCGACAAAAAGTACACGCAAGCTCACAATCTTAAGTATCACATCAACACTCATACTGGAGAGACGCCATACGCCTGTGAAGTTTGCCCTTTGGCTTTTGGAGATCCCCGATCATTGGCGTCTCATAGTTCTTTCCATACAAAACAGCATAGCTGTGATGTGTGCCATAAAACGTTATCATCAGCAGATAGTCTTAAGGTCCATATGACCATTCATACTGGAAATAAGCCCTTTAGCTGTGAATTGTGCGAGAAAAAGTTTAGTCGTCCTGCCAGTCTTAAATATCATATCAACACTCACAGTGGAGAAAAGCCGTATAGCTGTAAAGTTTGCAAAAAATCATTTGCAGATCCTCGCTCTGTATTATCCCACAGTGTTCTTCATTCTGAACACAAGTACTGCTGTGACGTATGCAAAAAAAATTTCTCAAGAGCCAAAAGTCTTCGAATACATATGACCCTGCATACCGGAAAGAGGCCTTTTAGCTGTCCATGCTGTAATAAGATGTTCATCTTTGTCAGGAACCTTTTGAACCACAAGACGTCTCATTTTGAAAAACGTTTTATGTGCTCGGTGTGCGGAAAGCAATACAAAGATGCCTGCTATTTGAAGGCACACGTCAGAGTCCATTCTGGAGAAAAGCCTTTTGAATGCCAACTGTGCCACAAGAAGTTCAAATATTCCAGCAATCTGTCTTCGCACATGAAAACCCATAGTGCCCAAAACGTCACAGATTTGGTTGTCCAAGATATAGCTGTGATGTATGCAGTAAAACGTCAGCGTCAGCCTATGGTCTTAAAGTCCATATGA
Protein Sequence: MDEEIKVKTEFDDEEQIVRIKQESIYTEDFNIKEECIDIDEEREDMIEVEKSFGLTKDPLEIDNFQPISTRKRHECELCGKMFTLTHLRDHMSFHNGEKLHSCDVCGKTFTYASNLLAHKAIHSEKRFSCSVCAKKFTEARYLRTHERVHTGEKPFKCEVCHNYYAHASTLKKHMEIHKPRECKTSSISRVQEGKQSCLVCQKRFLCSDSFLVHVCSNTAEKSQVAESSLIDVKPKCDVCNKTFSSENGLKVHMKIHTGEKPFSCTFCDKKFNRADNLKFHINVHTGEKPYSCEVCEKAFGDPRSLMVHRAVHSEKMHTCGVCQKTFSLARSLKKHMSTHSDGAVHSENCQETFLNSDSLQTHMRAHEQGSQFGQNFTDSVVQDKHSCDVCNKTLASAYGLKVHMKTHTGEKPFSCIFCNKKFNRAANLKYHINIHTGEKPYTCEICDKAFGDPRSLSSHSLVHSPVHSCDVCQKTFTKAKNLKAHMASHTGEKPFSCEFCEKKFIYASNLSAHKATHFEKRFTCSVCSKKFTEGRVLKMHMRIHTGEKPYSCQLCEKKFTFNSSFRDHIASHSGVKYNCEVCQKTYLRAKSLKVHMRTHGEKPFSCKFCDKKYTQAHNLKYHINTHTGETPYACEVCPLAFGDPRSLASHSSFHTKQHSCDVCHKTLSSADSLKVHMTIHTGNKPFSCELCEKKFSRPASLKYHINTHSGEKPYSCKVCKKSFADPRSVLSHSVLHSEHKYCCDVCKKNFSRAKSLRIHMTLHTGKRPFSCPCCNKMFIFVRNLLNHKTSHFEKRFMCSVCGKQYKDACYLKAHVRVHSGEKPFECQLCHKKFKYSSNLSSHMKTHSAQNVTDLVVQDIAVMYAVKRQRQPMVLKSI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -