Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.29 2.1e+02 2.0 0.4 17 43 83 106 75 107 0.78

2 7 0.0024 1.7 8.7 3.7 10 41 98 128 92 130 0.78

3 7 0.0035 2.5 8.2 0.8 14 29 132 147 128 158 0.80

4 7 0.0075 5.4 7.1 0.7 17 38 163 181 152 182 0.76

5 7 0.007 5.1 7.2 0.8 13 37 187 208 178 216 0.73

6 7 0.0026 1.9 8.6 3.0 17 39 219 238 208 244 0.87

7 7 0.023 17 5.6 3.1 18 40 248 267 240 270 0.74

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.29	2.1e+02	2.0	0.4	17	43	83	106	75	107	0.78
2	7	0.0024	1.7	8.7	3.7	10	41	98	128	92	130	0.78
3	7	0.0035	2.5	8.2	0.8	14	29	132	147	128	158	0.80
4	7	0.0075	5.4	7.1	0.7	17	38	163	181	152	182	0.76
5	7	0.007	5.1	7.2	0.8	13	37	187	208	178	216	0.73
6	7	0.0026	1.9	8.6	3.0	17	39	219	238	208	244	0.87
7	7	0.023	17	5.6	3.1	18	40	248	267	240	270	0.74

Coding Sequence: ATGGAAGCTGATTGGAGTTCTGAAGACTGCGAAGAAGGTTCGTTGAAAATCAAAGAAGAAATCCTAGATCCTGGCAACCATTTTTTGGCCGGCACTTCAAATTTGGCTCAAAACAAGATGAGTCCTTGTGAAGGACTGAACAGCTCAGACTGCGCCGATGATCTTGCTGGCGAGAAGAGCTGCGACAGCAGATCGACCGACTTGGATGCTCGAGATTGTCTCCAGGTTGAGATGCTCGATGAAACTTACCAATGCGGTCTTTGCTGGAGGAAGTTCGCTTATCCAGGCAAACTTAAATTACATTTACGGACTCTTCACGCAGGTTGCAAAATATGCGGGAAGATGTTCACAACTTCGAGCAACAAGAAAAGGCATATGAAGACGCATACGGGTGAAAAGTCGTACAGATGCGACATCTGCGGGAAAACGTTTACGCAGGATACGGGTCGCCAGAAGCACATGACGGTCCATACAGGAGAGAAGCCGTTCGCATGCGCAATTTGCCACAAGACGTTCGCAAGAGCCGAATCTTTAAGGAGACACACGCTAGCTCATGCGCAGGAGAAGCCGTACGTGTGCGAAATTTGCCAGAAGACGTTCGCGCAATCGGAGATGCTGAGCAGACACAGAAAGACGCATAAGACAAAGGAGCCTTCCCGATGTGAAATCTGCTTCAAGCAATTCTCAGAAAAGCAATGCTTGAGCCGACATATGATTCTGCACAGCGGCAAGATGCCGTTTGAATGCGCGTTATGCAATAAGAAGTTCAGCCGTCGCGACAATTATAATGTCCATATGAGAAAACATCATTGA
Protein Sequence: MEADWSSEDCEEGSLKIKEEILDPGNHFLAGTSNLAQNKMSPCEGLNSSDCADDLAGEKSCDSRSTDLDARDCLQVEMLDETYQCGLCWRKFAYPGKLKLHLRTLHAGCKICGKMFTTSSNKKRHMKTHTGEKSYRCDICGKTFTQDTGRQKHMTVHTGEKPFACAICHKTFARAESLRRHTLAHAQEKPYVCEICQKTFAQSEMLSRHRKTHKTKEPSRCEICFKQFSEKQCLSRHMILHSGKMPFECALCNKKFSRRDNYNVHMRKHH

Sequence clustering based on sequence similarity using MMseqs2