Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.22 1.6e+02 2.4 5.1 12 39 58 82 53 114 0.81

2 7 0.014 10 6.3 2.7 18 43 120 142 106 143 0.85

3 7 0.039 28 4.8 0.3 18 41 151 171 148 173 0.87

4 7 0.001 0.74 9.9 1.0 3 40 169 198 167 201 0.89

5 7 0.027 20 5.3 1.8 15 38 204 224 198 228 0.77

6 7 0.069 50 4.1 0.0 17 41 246 267 238 269 0.80

7 7 0.023 17 5.6 0.0 19 44 276 298 271 298 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.22	1.6e+02	2.4	5.1	12	39	58	82	53	114	0.81
2	7	0.014	10	6.3	2.7	18	43	120	142	106	143	0.85
3	7	0.039	28	4.8	0.3	18	41	151	171	148	173	0.87
4	7	0.001	0.74	9.9	1.0	3	40	169	198	167	201	0.89
5	7	0.027	20	5.3	1.8	15	38	204	224	198	228	0.77
6	7	0.069	50	4.1	0.0	17	41	246	267	238	269	0.80
7	7	0.023	17	5.6	0.0	19	44	276	298	271	298	0.92

Coding Sequence: ATGGAGGTTGGATTTGAGATTAAAGAAGAGGTCATTGATGATGTTTATGTTCCTGATAGTGAAGACTATGATGAAGAGGATGAGGTTTATGATGAAATTGACATTAAAGAAGAACGCATCGAGATAAAAGAAGAGGATGTATATGATGAGGGTGGGATTCAGCAAAAGAAGGCAAAAGAGAAAAAAGTCGAGTGTGAATTCTGTCCGGTGAAATTCTACAACAATAGCTCGCTGAAGAAGCACATGCTGATACATACTGGGGAGAAGCCATATAGCTGCGATGTGTGCGAAATGAAGTTCTCCCGAGCTTACCATTTAAGGAACCATGCGACCCTCCATTCAGGGAAGAGGCCATACATCTGCGAATTGTGCCAAAAGTCATTTACTCAAGCATCGGGTCTTCGATGTCATATCAAGAAGGTCCATACGGGCGAAAGTGTCAGGTCTTATGAATGTACTTTCTGCGAGAGCCGTTTTACTTACTCGAGCGACCTTCAAAGGCATGTATGGACCCACACAGGGGAGAAGCCTTTTGTCTGCGATATATGTCAACGATCATTCACCCGTGCAAGTCGTCTCAGAAGCCATATACGGCTACACACCGGAGAAACCCCCTACAAGTGTGAATTCTGCGAGAAAAAATTTGCTTGCTCGAACAGCTTCAGGAGGCATAGACTGACCCATAGCGATCCTTTCAAAATGTGCCGCCCTGACAGCCCAAATGAAGAGCGACCTTACACATGTGATGTTTGTGAAAAGAAATTTACCGTTCCTAGCAAACTGAAAATCCATTTGAGAACCCATACTGGCGAAAGGCCCTTCCCATGCGATCTTTGTGATAAGAAGTTTGCCGATTTCAGCAACCTGAAGAAACACAGCGTTCGTGTCCATTCATCTTGTAGTACACACTTTGCTCTAATTACTCAATAA
Protein Sequence: MEVGFEIKEEVIDDVYVPDSEDYDEEDEVYDEIDIKEERIEIKEEDVYDEGGIQQKKAKEKKVECEFCPVKFYNNSSLKKHMLIHTGEKPYSCDVCEMKFSRAYHLRNHATLHSGKRPYICELCQKSFTQASGLRCHIKKVHTGESVRSYECTFCESRFTYSSDLQRHVWTHTGEKPFVCDICQRSFTRASRLRSHIRLHTGETPYKCEFCEKKFACSNSFRRHRLTHSDPFKMCRPDSPNEERPYTCDVCEKKFTVPSKLKIHLRTHTGERPFPCDLCDKKFADFSNLKKHSVRVHSSCSTHFALITQ

Sequence clustering based on sequence similarity using MMseqs2