Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.17 1.3e+02 2.8 2.0 19 40 94 112 89 115 0.91

2 6 0.052 38 4.4 0.4 19 38 122 142 117 146 0.93

3 6 0.00011 0.08 13.0 0.2 18 41 149 169 144 171 0.90

4 6 0.014 10 6.2 0.5 17 38 176 198 170 200 0.91

5 6 0.0047 3.4 7.8 1.4 17 41 204 225 199 226 0.89

6 6 0.00047 0.34 11.0 0.3 18 41 233 253 230 255 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.17	1.3e+02	2.8	2.0	19	40	94	112	89	115	0.91
2	6	0.052	38	4.4	0.4	19	38	122	142	117	146	0.93
3	6	0.00011	0.08	13.0	0.2	18	41	149	169	144	171	0.90
4	6	0.014	10	6.2	0.5	17	38	176	198	170	200	0.91
5	6	0.0047	3.4	7.8	1.4	17	41	204	225	199	226	0.89
6	6	0.00047	0.34	11.0	0.3	18	41	233	253	230	255	0.91

Coding Sequence: ATGGATTTTGAAATCAAAAAGGAAATGATGGAGGATGTCGATGAACTTCTATCTCAAATCTTGATGAATGAAGAAGATATTGTTGATTTCGATATCAAAGAGGAGCCGCCCTTTACTTACCCAGATGGATTGAAAGAAGATATTGACTTGAACATTAAAGAGGAGGACGAAGTTTTCGTGGGAGGTGGTTCAAATACGGACGAAATCGATGGAGTGGAAAGCAGAGAAGTGCCTTCCGAGGCAATTATTAAAACTCATACTGGAGGGAAGCCTCACAGTTGCCATGTTTGTGATCGCAGGTTCAGCTATAGGAGTAGTTTAAGAAGACACATTAGGATTCATACCGGAGAAATGCCTTACGACTGCTATTTATGTGATGCCAAGTTCAACCAAAAAGTTCATCTAACAACACACTTAAGGATTCACACCGGAGAAAAGCCTTTTATGTGCAAAATATGCGATGCCAAGTTTAACGATGCAAGTAATTTAAAAAGACACCTTAGGACTCATACTGGAGAAAAGCCTTACGTGTGCGCAGTTTGCGACGCCAGGTTCAGCCAAAGAGCTCATCTAACGACACACTTAAGGACTCACACTGGAGAAAAACCTTATAAATGTAATCTGTGCGACACCTTGTTCAGCCATGGCAGTAGTTTAAAAAGACACCTTAGGACTCATACTGGAGAAATGCCGTATAACTGCGGCATGTGCGAAGCCAAGTTCAACGATGCAAGTAATTTAAAGAGGCACTTAAAGACTCATTCTGGAGAAGAAATAAGTCAAGCGCCGCAAGAAGAAAAGGAATGCCACAAAGATGAGTAA
Protein Sequence: MDFEIKKEMMEDVDELLSQILMNEEDIVDFDIKEEPPFTYPDGLKEDIDLNIKEEDEVFVGGGSNTDEIDGVESREVPSEAIIKTHTGGKPHSCHVCDRRFSYRSSLRRHIRIHTGEMPYDCYLCDAKFNQKVHLTTHLRIHTGEKPFMCKICDAKFNDASNLKRHLRTHTGEKPYVCAVCDARFSQRAHLTTHLRTHTGEKPYKCNLCDTLFSHGSSLKRHLRTHTGEMPYNCGMCEAKFNDASNLKRHLKTHSGEEISQAPQEEKECHKDE

Sequence clustering based on sequence similarity using MMseqs2