Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.017 12 6.0 1.1 18 41 15 35 2 37 0.83

2 10 0.21 1.5e+02 2.5 1.3 3 28 29 53 27 58 0.77

3 10 0.0081 5.9 7.0 0.2 3 39 57 89 55 98 0.85

4 10 0.022 16 5.6 4.6 16 41 125 147 85 149 0.74

5 10 0.013 9.4 6.4 0.4 17 40 154 174 147 177 0.86

6 10 0.0038 2.8 8.1 0.4 17 41 182 203 175 205 0.87

7 10 0.00095 0.69 10.0 0.3 17 41 210 231 204 233 0.88

8 10 2.6 1.9e+03 -1.0 0.3 18 29 239 250 234 261 0.67

9 10 0.0041 3 8.0 1.2 14 40 263 286 252 289 0.81

10 10 5.3e-05 0.038 14.0 2.2 6 44 284 318 279 318 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.017	12	6.0	1.1	18	41	15	35	2	37	0.83
2	10	0.21	1.5e+02	2.5	1.3	3	28	29	53	27	58	0.77
3	10	0.0081	5.9	7.0	0.2	3	39	57	89	55	98	0.85
4	10	0.022	16	5.6	4.6	16	41	125	147	85	149	0.74
5	10	0.013	9.4	6.4	0.4	17	40	154	174	147	177	0.86
6	10	0.0038	2.8	8.1	0.4	17	41	182	203	175	205	0.87
7	10	0.00095	0.69	10.0	0.3	17	41	210	231	204	233	0.88
8	10	2.6	1.9e+03	-1.0	0.3	18	29	239	250	234	261	0.67
9	10	0.0041	3	8.0	1.2	14	40	263	286	252	289	0.81
10	10	5.3e-05	0.038	14.0	2.2	6	44	284	318	279	318	0.84

Coding Sequence: ATGAGGAGGCATATGATAATTCATACTGGAGTAAAGCCTTACAAATGTGAATATTGTGATGCCAAGTTTGTTCAGCAAAGCAGTATTAAAAGGCATATGAGAACTCATACTGGAGAGAAGCCATACAAATGTGAAATTTGTCAGGCAGATTTTTCCGATTTACACAGTGTGAAGAGGCATTTTTTACTCCATACTGGAGAAAAGCCTTTCAGTTGCGATCTCTGCGAAGCCAAATTTGCTCAATCATACCAGTTGAAGGCGCACTTGATAATACACACAGGACTAAAGCCTCATAAATGCGAGCTTTGTGAAGCGAATTTTACAGAGTCAAGCTCTTTGAAAGTCCATATGAGAATTCACACTGGAGAGAAGCCTTACTGTTGTGATCAATGTGATGCTAAGTTTTCTCAATCGAGCAATCTGAAGGCGCATATGAGGACCCACACGGGAGAGAAGCCTTTCAAATGTGAGCTTTGTGATGCTAAGTTTTCCGAGATGAGCTCTATGAAGAAACATTTGAGAGTTCATACTGGAGAGAAGCCTTTCAAATGTGAGCTTTGTGATGCAAAGTTTGCCCGGTCGAGCCATTTGAAAGTTCATTTAAGAACGCATACTGGAGAGAAGCCCTTCAAATGTGAGCTTTGTGATGCCAGGTTTACGGATTCGAGCACAATGAAAAGGCATTTAAGAAGTCATACGGGGGAAAAGCCATACAAATGTGAGCTTTGTGACTCAAGGTTTTCTCAACCGCGCAGTTTGAAGGTGCATATGAGATCTCATACCGGAGAGAAACCGTACAAATGTGAACATTGTGTGGCCAAATACTCCGATCCCAGTTCGTTGAGGAAGCATTTGAAAATTCATTCCGGAGAAAAGCCGTACAAATGTGAGCTTTGTGAGGCCAAGTTCTCAGAAGGGAGCAATCTAAAGAAGCATATTATGAGAATTCACTCCAGTGCCTTGATTCCCACTTGA
Protein Sequence: MRRHMIIHTGVKPYKCEYCDAKFVQQSSIKRHMRTHTGEKPYKCEICQADFSDLHSVKRHFLLHTGEKPFSCDLCEAKFAQSYQLKAHLIIHTGLKPHKCELCEANFTESSSLKVHMRIHTGEKPYCCDQCDAKFSQSSNLKAHMRTHTGEKPFKCELCDAKFSEMSSMKKHLRVHTGEKPFKCELCDAKFARSSHLKVHLRTHTGEKPFKCELCDARFTDSSTMKRHLRSHTGEKPYKCELCDSRFSQPRSLKVHMRSHTGEKPYKCEHCVAKYSDPSSLRKHLKIHSGEKPYKCELCEAKFSEGSNLKKHIMRIHSSALIPT

Sequence clustering based on sequence similarity using MMseqs2