Olae006403.1
Basic Information
- Insect
- Orius laevigatus
- Gene Symbol
- -
- Assembly
- GCA_018703685.1
- Location
- JAGWEN010001161.1:20977-24212[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.2e-13 6.7e-10 38.5 0.0 1 39 214 253 214 257 0.90 2 4 1.4e-12 4.1e-09 36.0 0.2 2 39 269 306 268 309 0.93 3 4 5.6e-18 1.7e-14 53.3 0.0 2 45 324 368 323 368 0.98 4 4 2.3e-19 6.9e-16 57.7 0.0 1 43 375 418 375 419 0.96
Sequence Information
- Coding Sequence
- ATGAGCCTTCTAAAGACTGCAGATCAGCTAAAGATCAAAGGACTATGTGAGGTGCCTGACGGAAAAGAAGGCGCCGAAGTGACCCCTCTTCCTTTCAACTCGTCCCAAAGACGCCTCTCCATTCGCAGGCGAAGACTCAATTCTGCCAAACGACGACTTCAAAACCGCGAACGTCAAAACATCAACCAGAGTCAGATGGAATGTATGGATGTCAGCACAGTTATTGAAGATTCAAAAGAATTACCAGCATTAGTTGATCCTACAGAGGACATAGCCGATCCTATGATACTCCCTCCTAGCCCACAACCTATCCAACTTCCTGAACCCGAAAATGTCGACGAACTCCAAACTATAACCGAGTTGACACCTCCTTCTGCGACCCTTGTTTCAACGGTCGACCTCCCCCTTTCCGAAACCCGTGACGTCGCTGTCGACTCTAGCGATCTAAATGCTGAAAATGATGTCAAAGTCAAATATGAGACGTTGCGAGCCATGGAAGATCTGACCCAATTTAAAGATCTTGAACACCAAAAAGATATGCACACTATGATGATCACACCTGAACTCCTCGGCCTCATACCTTCTTCCAGTTCAGATGGTAGTGAGACCAAAAATGGTTGCCCGGCTACAAAAACGTGGACGCAAGAAGACATGGAGGCTGCGCTGGAAGCCCTTCGGAATCAAACGATGTCCCTGAGTAAGGCGTCATTGAATTTCGGAATTCCGTCAACAACATTATGGCAGAGGGCACACCGACTTGGGATTGATACTCCAAAGAAAGATGGACCATCGAAATCATGGTCGGAGGCGAGTCTAAATACAGCGTTGGATGCCCTTCGAACTGGATCGATTTCAGCGAACAAAGCATCGAAAGCATACGGAATCCCGAGTAGTACTCTCTATAAAATTGCACGACGAGAAGGAATTAGGTTGGCAGCACCATTTAATGCTGTGCCGACTGCATGGGTCCCAGAAGACCTTGAAAGAGCACTTGAAGCAATCAGATCTGGACAGTTTACCGTTCAAAGGGCAGCTACTGAATTTGGAATTCCTTCGGGAACGTTGTATGGCCGATGTAAACGTGAAGGAATCGAACTTTCACGTAATATTCCGACTCCTTGGTCCGAAGACGCCATGTTGGATGCCCTTGAAGCAGTTCGTAATGGACAAATGAGCATAAATCAAGCAGCGATCCACTACAACCTTCCATACTCTTCGCTCTACGGTCGTTTCAAGCGATGCAAATACGAAGCGGAAGGAAGCTCTGGTGGCGAAATGGAGAACGAACCGACCCCTCAAGTAATGACACAACCTCCCCCCCAACCTCAACCTCAACCTCCCCAAATCATGCTCGTACAGTACCAGCAGCCCCTCCACATGTACCAGTCGGCCACATGA
- Protein Sequence
- MSLLKTADQLKIKGLCEVPDGKEGAEVTPLPFNSSQRRLSIRRRRLNSAKRRLQNRERQNINQSQMECMDVSTVIEDSKELPALVDPTEDIADPMILPPSPQPIQLPEPENVDELQTITELTPPSATLVSTVDLPLSETRDVAVDSSDLNAENDVKVKYETLRAMEDLTQFKDLEHQKDMHTMMITPELLGLIPSSSSDGSETKNGCPATKTWTQEDMEAALEALRNQTMSLSKASLNFGIPSTTLWQRAHRLGIDTPKKDGPSKSWSEASLNTALDALRTGSISANKASKAYGIPSSTLYKIARREGIRLAAPFNAVPTAWVPEDLERALEAIRSGQFTVQRAATEFGIPSGTLYGRCKREGIELSRNIPTPWSEDAMLDALEAVRNGQMSINQAAIHYNLPYSSLYGRFKRCKYEAEGSSGGEMENEPTPQVMTQPPPQPQPQPPQIMLVQYQQPLHMYQSAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -