Orus042831.1
Basic Information
- Insect
- Orchestes rusci
- Gene Symbol
- -
- Assembly
- GCA_958502075.1
- Location
- OY293311.1:1399354-1403111[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 7.9e-05 0.013 17.5 0.2 1 23 58 81 58 81 0.97 2 14 0.15 25 7.2 1.1 2 17 90 105 89 106 0.91 3 14 0.33 54 6.1 5.6 2 23 116 138 115 138 0.92 4 14 0.00037 0.059 15.4 1.2 1 23 145 168 145 168 0.97 5 14 0.004 0.65 12.2 4.3 1 23 175 198 175 198 0.96 6 14 6.7e-05 0.011 17.8 1.2 2 23 206 228 205 228 0.95 7 14 0.51 82 5.6 0.4 2 23 236 257 235 257 0.96 8 14 1.1 1.8e+02 4.4 0.2 1 12 264 275 264 277 0.91 9 14 0.88 1.4e+02 4.8 2.6 1 15 451 465 451 465 0.92 10 14 0.012 1.9 10.7 2.2 2 23 479 501 478 501 0.94 11 14 0.0001 0.017 17.1 4.2 1 23 537 560 537 560 0.97 12 14 0.013 2.1 10.6 1.5 2 23 568 590 567 590 0.97 13 14 0.00014 0.023 16.7 3.5 1 23 605 628 605 628 0.96 14 14 0.0035 0.57 12.3 1.0 2 23 636 658 635 658 0.97
Sequence Information
- Coding Sequence
- ATGTTGATAAAACAAGAACCCTTTACTGAAAAGGGTGAAATCCAAAACCCAGAACTGAACATCAAAGAAGAACCCATCGAATATGTGGCTGAGGATAATCAACAATGTGATGCTCCATTGCATGTCACTGAGGAAGATCTGAAAGATCTTTGCCAGCAGTCTGGCAAACAATACCAGTGTAGGACTTGTGGCAAGAAATTCCCAAAAAAAGGTGCCCTAGTGGGTCATATCGCGATGACACATGTCAATGCGAAACGCAGAGATTGCAAGTGTACTATTTGCGAAAAGTCCTCCAAGTATGAGGAAAATTTGCGCGCGAAAGTCAAGCAGGGCGATGAAATTATCAAGTGTGACTTTTGTTGCAAACAGTTCAAGCACAGGCGTTGGTTAAATCGGCACGTGGAGCTGCGGCATGTGCAGCACAATGAAGTGTTCAAGTGTAACTTATGCCCCAAGTCGTTCAAGCTTGAGTACATACTTGAAAGGCATCTCAGGCAACAACATGAGAAGCctgtgaaaatattcaaatgtgaCTTATGTGATAGATTTTACAGACGTAAGCCTTGTTTGGATAAACATGTGAAGCAACAACATGCGCAGCCTGAAGAGATATCCAAGTGCGATTTCTGTGATAAGTCTTACAAGCAAAGGGAAAAGTTGCAATTGCACATTCAAGCACAGCATATGGATAGTAATGGTAAATTGAAATGTATGTTTTGTGACCAACTCGTCAATGAGAAAGATGATTTGGACAAGCATGTTAAACAGCACGAGGAGAACAAGCAAATATTCAAGTGTAATGCTTGTGATAAATCCACAACCACTTTAATAAAACCAGAAATCTACACTGAGAAAATCAAAATCGAAATCCCGGAACCGATAATCAAAAAAGAACCCATCGAAGATCTGGAAGAAAATCGGGAATGCGATGCCTCATTGCAGATCACtaataaaaatttggaaaaaccttATCAACAGTCTGCCAAGAAATTCCAACATATCCAGAGCACACATACTAGTGTAGATTTCTTGCGCACGCATGTCAAGCTGAATGAGGAGACTTATCACATAAGACAAACTGAAGAATTCAAATTCACAGCCACTTTGATGAAACCAGAACTATCCACTGAAgaaataaaaatcgaaataCCGGAACTGATAATCAAAGATCCGGCTCAGGAAAACCATCAGGAACTCGATTCCTCGTTGCAAACCACTAAGGAAGATCTGGAACTTTGTGATCAGTCTGGAAGAATATACCAGTGTAAATTCTGCTGCAGAAGTTTATCCCTTGAAGGTCTATTGGAGCATTTGCAGTGCGTGCACGCTAGTGTGGCCCATGATGAAGTATTTAACTGTGTCTGGTGTCATAAGTATTTCAAGCGTAAGAAAAATTCGCAGATACTTGTCAAGGTACACTACACACAGCATACCAAGTGCGGCTTTTGCGCCAACCGCTTCAAAAATAAGTTTAAGTTGCAAAAACACATTCAAGGACAGCATATGGACACCAATGGCAAATTGAAATGTATGGTTTGTTGCCAAATTTTCAATGCTAAAGATGATTGGGACGAGCATGTCAAACAACATAAGGAGAACAACGAGATATTCAAGTGTAATGATTGTGATAAATTTTTCAAAGCTAAAAAAGGTCTTTGTCGTCATGAAAAAATCCAGCACTCAGAAAATAAGCAAATTGTGAGATGTAGTTATTGTAATGTGACTTTGGAACACGAATTTTCCTTGAAATATCATATCAAGCGAGTGCACCCGGACAAACAAGTCAAACGTCATGAGGAGAAAAACAGGATATTTGAGTGTAATGTTTGTGACAAGTTTTACAAGACTAGAAAGAGTCTTTGTGTTCATGAAAAAATCCAGCACTCAGAAAATAAGCAAATTGTGAAATGTAGTTATTGTGATGTGATTGTCAAGCAcgaaatttatttgaaacagCATATCAAGCGAATGCACCCTGACAAAGTCTCGTTGCCGAAGCCTAATCTCAATTAG
- Protein Sequence
- MLIKQEPFTEKGEIQNPELNIKEEPIEYVAEDNQQCDAPLHVTEEDLKDLCQQSGKQYQCRTCGKKFPKKGALVGHIAMTHVNAKRRDCKCTICEKSSKYEENLRAKVKQGDEIIKCDFCCKQFKHRRWLNRHVELRHVQHNEVFKCNLCPKSFKLEYILERHLRQQHEKPVKIFKCDLCDRFYRRKPCLDKHVKQQHAQPEEISKCDFCDKSYKQREKLQLHIQAQHMDSNGKLKCMFCDQLVNEKDDLDKHVKQHEENKQIFKCNACDKSTTTLIKPEIYTEKIKIEIPEPIIKKEPIEDLEENRECDASLQITNKNLEKPYQQSAKKFQHIQSTHTSVDFLRTHVKLNEETYHIRQTEEFKFTATLMKPELSTEEIKIEIPELIIKDPAQENHQELDSSLQTTKEDLELCDQSGRIYQCKFCCRSLSLEGLLEHLQCVHASVAHDEVFNCVWCHKYFKRKKNSQILVKVHYTQHTKCGFCANRFKNKFKLQKHIQGQHMDTNGKLKCMVCCQIFNAKDDWDEHVKQHKENNEIFKCNDCDKFFKAKKGLCRHEKIQHSENKQIVRCSYCNVTLEHEFSLKYHIKRVHPDKQVKRHEEKNRIFECNVCDKFYKTRKSLCVHEKIQHSENKQIVKCSYCDVIVKHEIYLKQHIKRMHPDKVSLPKPNLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -