Orus042975.1
Basic Information
- Insect
- Orchestes rusci
- Gene Symbol
- -
- Assembly
- GCA_958502075.1
- Location
- OY293311.1:3369179-3391706[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 6.5 1e+03 2.1 1.0 1 10 180 189 180 192 0.86 2 11 0.00085 0.14 14.3 9.4 1 23 305 328 305 328 0.96 3 11 2.4e-05 0.004 19.1 3.6 1 23 335 358 335 358 0.97 4 11 0.00077 0.12 14.4 3.9 2 23 372 394 371 394 0.96 5 11 0.078 13 8.1 0.5 2 23 400 422 399 422 0.93 6 11 0.00013 0.022 16.8 6.7 1 22 436 457 436 457 0.96 7 11 6.9e-06 0.0011 20.9 3.3 1 23 474 497 474 497 0.95 8 11 0.00028 0.045 15.8 7.5 2 23 505 527 504 527 0.95 9 11 0.00042 0.067 15.3 0.7 1 21 534 554 534 555 0.95 10 11 0.0024 0.38 12.9 4.7 2 23 571 593 570 593 0.96 11 11 3.4e-06 0.00054 21.8 3.0 1 23 600 623 600 623 0.97
Sequence Information
- Coding Sequence
- ATGGGAGGGGGGATCAAGTTGATTATAGAAGAAGAAATACTTGAATTCAAACAAGAAAAGCTCTTTTGTCCTCCAATACCTATCATGGAGAGTAGCATAATATATCCCGACAATACCCAAACTGAAAAGAAGATCAATGAGGGAGCAATCAAAACTCCCTCCAAGAATGATAGCCTCAAACCCTTCGATACTGGAACAGAAAAGAGAACGAACGATGAAGCAATCGAAATAAGAACTTCCACCACGAAAGACATCGGGCCAGCTGATTGCGAAGATGGAGAAATcctagaaaaaaatttaaagcaAGAATCCCTCGACATCAGAGATGAATTATTAATTGATGAGGATGAGGACGTGGGCGAAAATTTCACCAATACGCAGCAAGGATACAAATGTAAATTTTGTGAAAGGCCAGCCGATTGCGAAGATGGAGAAATCCTagaaaaaattttgaagcaAGAATCCCTCGACATCAAAGACGAATTAATTGATGAGGATGAGGACGTGGGCGAAAATTTCACCAATACGCAGCAACGATACAAATGTAAATTTTGCGAAAGATCAAGCGAACGCACCCTGGACATGGGAGGGGGAGTCAAGTTGATTATAGAAGAAGAAATActtgaattcaaagaagaaaagcTCTTTAGCCCTCCAACTCCCACCAATCCTGACGAATTCCAAATTGAAAAGAATAGCAACAATGAAGCATTCCACAATAATACATTGGGGTGCAACATTTGTCATACCTCGTTTGGATGTCCAAGCAGTTTGAAGTGCCACGTTGACGACATGCATTCGCGCAAAATTCCCGAATCCATACGTAAAATTGGCAATAAGTTCCTCGAACGAGAAAGCCATTTGAATCAGGTCCATTCAGTGAACAAACAACGTGTATTCGAGCAAAAACCGTTCGCATGTCATTATTGTAGCAAAACGTTCGTGCATAAACGGAGCCTGGAAAAACACAACAAGACGTGCCACTCAGAAGAAAAGCCAAGATTTGAATGCCATATTTGTGGCAAGCACTTTAAACTGAATTATGTTTTGAAACGGCATATCGAGAAAGTCCATTTAGTGGTCAAACCACGTGTAAACGAGCAGGAACCTTCCGTATGTCACCATTGTAGCGAGACATTTGTGAATAGATGGAGCCTGGTTAAACATAACAAGACGTACCACCCAAAAGAAGAGTCAAGATGTCATATTTGTGGTAACCTCTATAAATCGAGAGGTGTTTTGGACCGGCATGTCCAAGAGGTCCATTCAGGAAAGAAACGACTACGTGTATACAAGCGGGGAACGTTCACTTGTCAACATTGTAGTAAGACGTTCGGGTATAAACACCACTTGACAAGACATATCAAGAAGAAGTgccaaaaaacaatatttgaaacGGCATCAAAAGAAAAGGCAAGTTTTGTATGCCATAATTGTGGTAAGCACTATAAAAGAAAAGAAGCATTGAAACAGCATATCCAGGATATCCATGAATACAAAGGGGAACCGTCGACATGTCACCATTGTAGTAAGACGTTCGGGTATAAACGGAACTTGACGAGACACATTGAGATATGTCATTTGAAAGCAAAGCCTAAATTTGAATGCTATAATTGTGGTAGGCACTTTGAAGAGAAATATGATTTGAAACTGCATATCCAGGAGGGTTATTTATCGAACAACCGATGTGTATACAAAGGGGAATCATTAACATGTCACCATTGTAGTAAGACATTCTGGTATAAGCAGTACTTGATAAGACACATTGAGACATACCACTCAAAAGAAAAGCGAAGATTTGAATGCTATGATTGTGGTAAAAAGTATAAACGGAAGTTTTCTTTGAAACGCCATACCCAGAGTGCCCATTTAGTGAACCAGCCACCAATGCAGTAG
- Protein Sequence
- MGGGIKLIIEEEILEFKQEKLFCPPIPIMESSIIYPDNTQTEKKINEGAIKTPSKNDSLKPFDTGTEKRTNDEAIEIRTSTTKDIGPADCEDGEILEKNLKQESLDIRDELLIDEDEDVGENFTNTQQGYKCKFCERPADCEDGEILEKILKQESLDIKDELIDEDEDVGENFTNTQQRYKCKFCERSSERTLDMGGGVKLIIEEEILEFKEEKLFSPPTPTNPDEFQIEKNSNNEAFHNNTLGCNICHTSFGCPSSLKCHVDDMHSRKIPESIRKIGNKFLERESHLNQVHSVNKQRVFEQKPFACHYCSKTFVHKRSLEKHNKTCHSEEKPRFECHICGKHFKLNYVLKRHIEKVHLVVKPRVNEQEPSVCHHCSETFVNRWSLVKHNKTYHPKEESRCHICGNLYKSRGVLDRHVQEVHSGKKRLRVYKRGTFTCQHCSKTFGYKHHLTRHIKKKCQKTIFETASKEKASFVCHNCGKHYKRKEALKQHIQDIHEYKGEPSTCHHCSKTFGYKRNLTRHIEICHLKAKPKFECYNCGRHFEEKYDLKLHIQEGYLSNNRCVYKGESLTCHHCSKTFWYKQYLIRHIETYHSKEKRRFECYDCGKKYKRKFSLKRHTQSAHLVNQPPMQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -