Basic Information

Insect: Orchestes rusci
Gene Symbol: su(Hw)
Assembly: GCA_958502075.1
Location: OY293304.1:14512518-14540141[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.99 1.6e+02 4.6 6.9 2 17 109 124 108 135 0.76

2 10 0.003 0.49 12.6 2.0 1 20 141 160 141 160 0.97

3 10 0.00038 0.061 15.4 0.4 1 23 220 243 220 243 0.95

4 10 1.3e-05 0.0021 20.0 4.8 1 23 249 271 249 271 0.98

5 10 1.8e-05 0.0029 19.5 2.8 1 23 277 299 277 299 0.97

6 10 4.4e-05 0.0072 18.3 0.1 2 23 306 328 305 328 0.93

7 10 0.00043 0.07 15.2 0.7 1 23 342 364 342 364 0.98

8 10 6.6e-05 0.011 17.8 3.1 1 23 370 392 370 392 0.97

9 10 1.6e-06 0.00026 22.8 0.5 1 23 399 421 399 421 0.96

10 10 2.4 3.9e+02 3.4 0.9 1 8 427 434 427 442 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.99	1.6e+02	4.6	6.9	2	17	109	124	108	135	0.76
2	10	0.003	0.49	12.6	2.0	1	20	141	160	141	160	0.97
3	10	0.00038	0.061	15.4	0.4	1	23	220	243	220	243	0.95
4	10	1.3e-05	0.0021	20.0	4.8	1	23	249	271	249	271	0.98
5	10	1.8e-05	0.0029	19.5	2.8	1	23	277	299	277	299	0.97
6	10	4.4e-05	0.0072	18.3	0.1	2	23	306	328	305	328	0.93
7	10	0.00043	0.07	15.2	0.7	1	23	342	364	342	364	0.98
8	10	6.6e-05	0.011	17.8	3.1	1	23	370	392	370	392	0.97
9	10	1.6e-06	0.00026	22.8	0.5	1	23	399	421	399	421	0.96
10	10	2.4	3.9e+02	3.4	0.9	1	8	427	434	427	442	0.88

Sequence Information

Coding Sequence: ATGTGTTGCCAAAGCCTCAAAAACGCCTTCGACTTCAAAAAACAAGTTGAAACTGTCGATAGGAGTCTCAAGGAATACTGCAAAAACATGAAAGTGAACGCCATCAAACAAGAACTACAAAACTCGGACTTCATGGAATCACTTAATACGCTCAATAATCTTCTAAACAATACTGCTGCCGAACAACAGAAGGAAACAACTCATGATGCTTCACCTATCGAAATCAATGATCCTTCAACAACAATAACGGAAAATGCAGTCATAAAGCCCACACCAGGAGTCACCGATTTTATTCAGTTTCTGGATCATAACCAAATGCTTCTCACATGTCGGGAGTGTGATAAAATGTTTACTACTTTGGACGGTCTAAGGATGGAACATCTAAAACGACACTTGACCACTCACTTGACCATTAAGCCTTATAATTGCAAAACTTGCAATAGAGGATTCAATAGGATTGAACATTTGCATAATCATATTCCTAGATGTAAAGGTAATGACAGTTCAGCTGAAGGTTCTGACGACGAATATCTTCCTAAAAAAACGTCGCCAACCACAACCAATGGAAAGAAAAGGGGTAGGCCGCGAATACATCCTCCTAAACCTAAAGGAACTGGAAGGAGGGGAAGACCTGTTGAAGAAGAGGAGATTGGCGATTTCACATGTCCTGAGTGCAATCAGTTCTTTGATCGAATCAGTTTATTGGACAAACATGCCAAAGAGTCACATCCAGGAGTGAAGATTCACAAATGCAACATCTGCGGCAAAGAATTCGGGCGTACCAACCATCTTAAGCGTCACCTGTCATCACATTCCGAAAGCCGACCGTTTTCCTGTGACATTTGCAACAGATCTTTCGCAAGAAAAGAGTATCTTTTGCAACATCATAAACTGCACACGCAGCAAGAGGAAATTCCTTGTGATATTTGCGAAAAACCGTTTAGCAGACTTGATCAACTGGCTAAGCATAAGGCTATTAAGCATGGTGTTGGAGAAAAAATTAATGCAATGGGCGAAAAGAAATACACCTGCGAAATCTGTCAGAAAGGTTTCACAACCGAAAAGTACCGTGATGTCCATATGAAGGCCCACAACGGCGAAAAGAAGTTCCCGTGCAAAGTGTGCGAAAAATCGTTCTTATCCAAATCGCATCTGAATGAGCATATGAAATTCCATAATGAACATTCCAAAAAGTTTCTATGCTCAGAGTGTGGACAGCGGTTTATCAGGAATGATTATTTGGTTATCCATATGAGAAGGCATAGGGGAGAGAAACCgttcaaatgtaaattttgtggaaaagAGAATTACACTTTTAAGCAGGCGGTGGAAGACGCAGATACAGTAATTGTGCAGACTGCTATCGAACTTGCTTCCTCTTTTTCCTCCGTTTGCGTTATTGGCGAAGACGTAGATTTACTTGTGCTGTTGACTGCTAAAGCCAGAGAAATTCCCAATGTCCACTTTCGCAAGCCGGGTAGAGGCAATAAGGAGGATGTGTTCTATTCACCCCAGAGCTTCCAATATAATGAATCTATTGCGAAATGTCTCTTATTTGTACATGCCTTTAGTGGTTGTGACACCACATCGGCGTTATTCAATGAAGGCAAGATACGATTCCTtaaaactttggaaaaaaatcctaCAATAACCGAGACGATTCAGGTATTTGATGACCCCAATGAGGTTCTGCTTAAGACTATCTCCTGTAGATGTCAGAAAGGTTGTGGTCCTGCTTGTGGTTGCCGTAAAGCAGGATTGAAATGTTCGGTTTTGTGTTTATACTGTACTGGGACGTCCTGCGAAAACATTAGTTACCATATTTTGCTGGAGGAAGACATCACAGAAGATGCCGGAAACATTTCCGATCCAACAGACGACGATGTGGACTCAATTTAA
Protein Sequence: MCCQSLKNAFDFKKQVETVDRSLKEYCKNMKVNAIKQELQNSDFMESLNTLNNLLNNTAAEQQKETTHDASPIEINDPSTTITENAVIKPTPGVTDFIQFLDHNQMLLTCRECDKMFTTLDGLRMEHLKRHLTTHLTIKPYNCKTCNRGFNRIEHLHNHIPRCKGNDSSAEGSDDEYLPKKTSPTTTNGKKRGRPRIHPPKPKGTGRRGRPVEEEEIGDFTCPECNQFFDRISLLDKHAKESHPGVKIHKCNICGKEFGRTNHLKRHLSSHSESRPFSCDICNRSFARKEYLLQHHKLHTQQEEIPCDICEKPFSRLDQLAKHKAIKHGVGEKINAMGEKKYTCEICQKGFTTEKYRDVHMKAHNGEKKFPCKVCEKSFLSKSHLNEHMKFHNEHSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKFCGKENYTFKQAVEDADTVIVQTAIELASSFSSVCVIGEDVDLLVLLTAKAREIPNVHFRKPGRGNKEDVFYSPQSFQYNESIAKCLLFVHAFSGCDTTSALFNEGKIRFLKTLEKNPTITETIQVFDDPNEVLLKTISCRCQKGCGPACGCRKAGLKCSVLCLYCTGTSCENISYHILLEEDITEDAGNISDPTDDDVDSI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -