Orus045353.1
Basic Information
- Insect
- Orchestes rusci
- Gene Symbol
- -
- Assembly
- GCA_958502075.1
- Location
- OY293311.1:29427151-29453512[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.89 1.4e+02 4.8 0.0 5 22 49 66 48 68 0.87 2 18 0.32 52 6.2 1.3 1 12 81 92 81 95 0.89 3 18 0.89 1.4e+02 4.8 0.0 5 22 151 168 150 170 0.87 4 18 0.32 52 6.2 1.3 1 12 183 194 183 197 0.89 5 18 0.89 1.4e+02 4.8 0.0 5 22 253 270 252 272 0.87 6 18 0.00016 0.025 16.6 5.7 1 23 285 308 285 308 0.97 7 18 0.0002 0.032 16.3 0.6 1 23 315 338 315 338 0.96 8 18 0.17 27 7.1 0.6 1 12 346 357 346 359 0.88 9 18 2.5 4.1e+02 3.3 0.0 2 12 420 430 419 432 0.86 10 18 0.00028 0.046 15.8 0.5 1 22 499 520 499 522 0.90 11 18 0.00058 0.093 14.8 0.1 2 22 591 611 590 613 0.89 12 18 1.6e-05 0.0026 19.7 2.9 1 23 626 649 626 649 0.98 13 18 0.7 1.1e+02 5.1 0.4 1 11 656 666 656 669 0.89 14 18 0.067 11 8.3 1.8 2 19 737 754 736 759 0.87 15 18 0.00021 0.034 16.2 6.5 1 23 772 795 772 795 0.96 16 18 0.00013 0.021 16.8 1.2 1 21 802 822 802 823 0.95 17 18 0.19 30 6.9 1.3 2 19 894 911 893 916 0.87 18 18 2.7 4.4e+02 3.3 3.0 1 13 929 941 929 943 0.92
Sequence Information
- Coding Sequence
- ATGGGTGGAGGAATCAAATTGATAATTGAAGAAGAAATACTTGACATAAAAGAAGAAAAGCTCTTTCTCCCTCCAACTTTTACTAAGGAAGATGAAGCCAACGAAAGAATAGATATGGAGGTTAGCAAAGAATTGACCCGCAACATCTGTCAAGTCTCGTTTGCATATCCTAAGGAGGTGAAACGCCACGTCGACGACATCCATTTGGCGAACAACCCACGTAGATACGAGCGGCCATTATTCACATGCCAAGATTGTAGTAGGACATTCGTACGATACAATACTTCAAGTCCCCAGATCCTAGACATGGGTGGAGGGATCAAATTGATAATTGAAGAAGAAATACTTGACATAAAAGAAGAAAAGCTCTTTCTCCCTCCAACTTTTACTAAGGAAGATGAAGCCAACGAAAGAATAGATATGGAGGTTAGCAAAGAATTGACCCGCAACATTTGTCAAGTCTCGTTTGCATATCCAAAGGAGGTGAAACGCCACGTCGACGACATCCATTTGGCGAACAACCCACGTAGATACGAGCGGCCATTATTCACATGCCAAGATTGTAGTAGGACATTCGTACGATACAATACTTCAAGTCCCCAGATCCTAGACATGGGTGGAGGGATCGAATTGATAATTGAAGAAGAAATACTTGACATAAAAGAAGAAAAGCTCTTTCTCCGTCCAACTTTTACTAAGGAAGATGAAGCCAACGAAAGAATAGATATGGAGGTTAGCAAAGAATTGACCCGCAACATCTGTCAAGTCTCGTTTGCATATCCAAAGGAGGTGAAACGCCACGTCGACGACATCCATTTGGCGAACAACCCACGTAGATACGAGCGTTCATTATTCACATGCCAAGATTGTAGTAGGACATTCGTGTATAAACACAGCTTGGCAAGACACATTACGACATGCCACTCAAAAGaaaagataagatttgaatgcTATACTTGTGGTAAGCAGTATGAACGAAAGGATAAATTGGGAAGGCATATCCAGGAGGTCCATTCTAAGAACATACGGCCAACTTTCCCATGCCAAGATTGTAGTAAGGTATTCAGACAAGACAATACTCCAAGATTACAGGGAGGGGAGAACAAGCTATTCATCAAAGAAGAAATACTGGAATTCAAAGAAGAGAAGCTCTGTGTTTCTTCAAGTGTCAACAAGAAAGACATTCCCAATCCTGTCGATAATCCAACAAAACATGAAGCTACTGAAATAATGTATATGAAGGATAGCAAAGAATTGAGTTGCAACATTTGTCATGCCTCGTTTGCATATCCAATCAGACGAGACAATACTTTAAGACGACCGAACCTGGACATTGAAGACGTCAAAGAAGAAATTCTTGAGTTCAAAGAAGAAAAGCTCTTTTTCCCTCCATCTCTCACTAAGGAAGACAGTCCCAATCCCTTCAATATCCAAACAAAAGATGATAACGACGATGAAgccaacaaaaaaatacatacggAGGATAGCGAAGAATTCAGCTGCAACATTTGTCATGTATCGTTTGCGTATCTGGAAGAGTTAAAACGCCACGTCGACGACATCCATTTGGCGAACAACACACGTGGATACGAGCGGCCTAGACGATACAATACTTCAAGTCCCCAGATCCTAGACATGGGTGGAGGGATCAAATTGATAATTGAAGAAGAAATACTTGACataaaagaagaaaacttcttTCTCCCTCCAACTTTTACTAAGGAAGATGAGGCCAACGGAAGAATAGATATGGAGGTTTGCAAAGAATTGAGCTGCAACATTTGTCAAGTCTCGTTTGCATATCCAAAGGAGTTGAAACGCCACGTGGACGACATCCATTCGGCGAACAATCCACGTAGATACGAGCGGCCATTGTTCACATGCCAAGATTGTAGTAGGACATTCGTGTATAAACACAGCTTGGTAGCACATATTAAGACTTACCACTCAAAAGAAAAGATAATATTTGAATGCCAAGATTGTAGTAAGGCATTCGGACGAGACAATATTTCAAGAGAACTAACCCTGGACAATGGAGACGTCAAATATATCATCGAAGAAGAAATACTTGAGTTTAAAGAAGAAAAGCTCTTTCTTCCTTCAACTCCCACTAAGCAGGATAGCTCCAATCCATTCGATATCCAATCaaaagacaaaaacaacgatgaAGCCTACGAAAGAAGACATATGGAGGATAAAAAAGAATTGAGCTGCAAAATTTGTCATGCCTCGTTTGCACACCAAGAGGAGTTGAAATGCCACGTCGGCGACATTCATTCGGTGAACAACTCACATAGATACGAGCGGCCAACGTTCACATGTCAACATTGTAGTAAGACGTTCAATTATAAGAGAAATTTGACAGGACACATAAGGGCATGCCACTCAAAAGAAAATATAAGATTCGAATGCCATGTTTGTATTAAGACGTTCAAGTATAAGGGCAATTTGACAAAACACATTGAGAGGCGAGGCAATACTTCAAGACAGCTAACCCTGGACAATGAAGACGTCAAATATATCATCGAAGAAGAAATACTTGAGTTTAAAGAAGAAAAGCTCTTTCTTCCTTCAACTCCCACTAAGGAGGAAAGCTCCAATTCATTCGATTTCCAATCaaaagacaaaaacaacgatgaAGCCTACGAAAGAAGACATACGGAGGATAAAAGAGCATTGAGCTGCAACATTTGTCATGCCTCGTTTGCACACCTAGAGGAGTTGAAATGCCACGTCGGTGACATCCATTCGGTGAACAACCCACATAGATACGAGCAGCCAACGTTCACATGTCAACATTGTAGTAATACGTTCAAGCATAAGAGGAGACGTTCAAGTCTAAGGCCGGTTTGGCAGGACACATTAGGACATTTCACTTAA
- Protein Sequence
- MGGGIKLIIEEEILDIKEEKLFLPPTFTKEDEANERIDMEVSKELTRNICQVSFAYPKEVKRHVDDIHLANNPRRYERPLFTCQDCSRTFVRYNTSSPQILDMGGGIKLIIEEEILDIKEEKLFLPPTFTKEDEANERIDMEVSKELTRNICQVSFAYPKEVKRHVDDIHLANNPRRYERPLFTCQDCSRTFVRYNTSSPQILDMGGGIELIIEEEILDIKEEKLFLRPTFTKEDEANERIDMEVSKELTRNICQVSFAYPKEVKRHVDDIHLANNPRRYERSLFTCQDCSRTFVYKHSLARHITTCHSKEKIRFECYTCGKQYERKDKLGRHIQEVHSKNIRPTFPCQDCSKVFRQDNTPRLQGGENKLFIKEEILEFKEEKLCVSSSVNKKDIPNPVDNPTKHEATEIMYMKDSKELSCNICHASFAYPIRRDNTLRRPNLDIEDVKEEILEFKEEKLFFPPSLTKEDSPNPFNIQTKDDNDDEANKKIHTEDSEEFSCNICHVSFAYLEELKRHVDDIHLANNTRGYERPRRYNTSSPQILDMGGGIKLIIEEEILDIKEENFFLPPTFTKEDEANGRIDMEVCKELSCNICQVSFAYPKELKRHVDDIHSANNPRRYERPLFTCQDCSRTFVYKHSLVAHIKTYHSKEKIIFECQDCSKAFGRDNISRELTLDNGDVKYIIEEEILEFKEEKLFLPSTPTKQDSSNPFDIQSKDKNNDEAYERRHMEDKKELSCKICHASFAHQEELKCHVGDIHSVNNSHRYERPTFTCQHCSKTFNYKRNLTGHIRACHSKENIRFECHVCIKTFKYKGNLTKHIERRGNTSRQLTLDNEDVKYIIEEEILEFKEEKLFLPSTPTKEESSNSFDFQSKDKNNDEAYERRHTEDKRALSCNICHASFAHLEELKCHVGDIHSVNNPHRYEQPTFTCQHCSNTFKHKRRRSSLRPVWQDTLGHFT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -