Orus045340.1
Basic Information
- Insect
- Orchestes rusci
- Gene Symbol
- -
- Assembly
- GCA_958502075.1
- Location
- OY293311.1:29292997-29294746[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5.9e-06 0.00094 21.1 2.8 1 23 87 109 87 109 0.96 2 13 0.0066 1.1 11.5 2.3 2 23 116 136 111 136 0.97 3 13 6.9e-05 0.011 17.7 1.4 1 20 142 161 142 162 0.94 4 13 0.0084 1.4 11.2 4.4 2 23 198 219 198 219 0.97 5 13 0.0088 1.4 11.1 0.2 1 20 237 256 237 258 0.94 6 13 9.1 1.5e+03 1.6 4.1 3 23 266 286 264 286 0.96 7 13 1.7 2.8e+02 3.9 0.7 2 23 293 315 292 315 0.92 8 13 1.1e-05 0.0017 20.3 7.5 2 23 320 341 320 341 0.97 9 13 0.0092 1.5 11.0 0.5 3 23 383 404 383 404 0.95 10 13 9.4e-06 0.0015 20.4 1.0 3 23 417 437 415 437 0.96 11 13 1.4e-05 0.0023 19.9 2.9 1 23 443 465 443 465 0.95 12 13 6.5e-06 0.0011 20.9 1.4 1 23 471 493 471 493 0.98 13 13 5.2e-05 0.0083 18.1 0.3 1 21 499 519 499 520 0.96
Sequence Information
- Coding Sequence
- ATGAACAAGCCTTTacaaagcaaaaatatggacATGAACAGTGAAGTTTTAGCTGGAATCATCAGGTTACAACTAATAATATTGAAACTCAAAGAAGAATATGAAGATGAAATCGACATTACCCCTACCACCTTGAACTGGAAACCCATACCTCTTACCTTAAACGATTGCGACATCATTGACAAGTCCCCCAAACTGAAAAGATCTCTAAAGCTCAATGACCAACAAAAGAAGATAAATATCAATAAACCCAATCAATACCTTTGCCAATTTTGTGGCAACAAGTTTGTTAATAACTCCAACCTCTGCCGCCACATCCGCATCCACAATGGTTGCGGCAAAGTGGTTTGCACCATCTGTGGCAAGCAAGTGACAAGGTACCATATGAAGCAACACATGGACAGCCATGGAGGCTCGAACAATCACCATTGTGGAGACTGTGGCAAGACGTACCGTACCAGCCGTGGGCTGAAGCAACACATTTCCTGTGTCCATTCAGGGGAGCATAAGTTTCAGTGTATTGTTTGTTTGAGGAAGTTTTCAAGGGTATATTTTAGGACTAAGCGACGTAGACCATACCGTGCACCTAGAACGTGCCCGAAATGCCACCAAGTTCTATCAACCCTCAAAGAGATGCGCCACCATATAAAGCAGCACTCCTCCTTGGACCCTATAGAAGAACACCACATCCAACCTCACGGAGAGGGTTACTCTTGCCAGACTTGCACCGCCAAATTTAAGACGTTGTCCGAGGCGCAACGGCATGTTGACATGAACAAACAGGAAACTTATGGTTGTCTCAAGTGCTCTTGCAAGTTTGCCAGCTTAAGGGCACTGTTTTGCCACATGGACATGCACAAGGAAGATGGACATCTATCGTGTCCCATGTGCAGTTATAAAACGCAACAGATGAAGAAGCTCTTGGGCCATCTGACGTCCAGCCACATGGACAGTAACGAGTGTCATGAGTGTCACAAGAAGTTCAACAGCAGGACTAACCTGCGCAAGCACATGTTGCGTCATGACGATTCCAAAAAGGTCACCTGCGTGGTATGCGCTAATGTGTACTATGGAGATAATGCCTTGCGCAGACATCAGCAGTGCATGCACAAGGCAGATATCATCGGAGATCCCACGCTGTTGTGGTGCGACATCTGTCGGCTGGAGTTCAAAACCTCCAATCTACTCAAGTACCACGTGGATAAAGCCCATATTAAAACCATCAAGCCTACAGAGAAGAATTGTTTGTGCGACATTTGCGGGCAAGGCTTCCGTGATGCTGACAATTTGAAGAAGCACAAAATATCCCATACGGAAGTAAGGCCCTTTTTGTGCTTGGAGTGTGGCAAGGCCTTCAAGCATAAGTACGTGCTGACGTACCATCAAAGGACCCATACGGGGGAGAGGCCGTATAGCTGTGGCTATTGTAGCAAGAGTTTTAGACAATGGACACCGTATAAGGTCCATCTAAGGTCGCATACGGGGGAGAAGCCTTATGTGTGTAAATTGTGTAACAAAGGGTTTACAACTAATCAGGGGTTGAAGTTGCACTTGAAAGGGTGTTTTAACAGGAGGGAGGAGGCTGTTGTTAAGGCTGAAGTTTGTTAA
- Protein Sequence
- MNKPLQSKNMDMNSEVLAGIIRLQLIILKLKEEYEDEIDITPTTLNWKPIPLTLNDCDIIDKSPKLKRSLKLNDQQKKININKPNQYLCQFCGNKFVNNSNLCRHIRIHNGCGKVVCTICGKQVTRYHMKQHMDSHGGSNNHHCGDCGKTYRTSRGLKQHISCVHSGEHKFQCIVCLRKFSRVYFRTKRRRPYRAPRTCPKCHQVLSTLKEMRHHIKQHSSLDPIEEHHIQPHGEGYSCQTCTAKFKTLSEAQRHVDMNKQETYGCLKCSCKFASLRALFCHMDMHKEDGHLSCPMCSYKTQQMKKLLGHLTSSHMDSNECHECHKKFNSRTNLRKHMLRHDDSKKVTCVVCANVYYGDNALRRHQQCMHKADIIGDPTLLWCDICRLEFKTSNLLKYHVDKAHIKTIKPTEKNCLCDICGQGFRDADNLKKHKISHTEVRPFLCLECGKAFKHKYVLTYHQRTHTGERPYSCGYCSKSFRQWTPYKVHLRSHTGEKPYVCKLCNKGFTTNQGLKLHLKGCFNRREEAVVKAEVC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -