Orus042218.1
Basic Information
- Insect
- Orchestes rusci
- Gene Symbol
- ZNF516
- Assembly
- GCA_958502075.1
- Location
- OY293310.1:26883392-26885711[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.8e-06 0.00029 22.7 2.2 2 23 138 159 137 159 0.96 2 9 3.1e-05 0.005 18.8 3.9 2 23 166 187 165 187 0.96 3 9 5.2e-05 0.0084 18.1 1.0 1 23 193 216 193 216 0.96 4 9 0.0008 0.13 14.4 4.4 1 23 231 253 231 253 0.96 5 9 6.2e-07 9.9e-05 24.2 1.4 1 23 259 281 259 281 0.99 6 9 0.0016 0.25 13.4 4.7 1 21 287 307 287 309 0.94 7 9 2.5e-06 0.0004 22.2 2.2 1 23 315 337 315 337 0.97 8 9 0.0018 0.28 13.3 2.9 2 23 344 365 343 365 0.96 9 9 1.8e-06 0.00029 22.7 4.5 3 23 373 393 371 393 0.95
Sequence Information
- Coding Sequence
- ATGAACCGCTTACCAATGCAAGTCGAATTAAATGCAGAAACTATATGTAGAACTTGTATGGCTTGTGATACAAATTTAACttctttgttttctgttttgggCTTTTTGAACAAAGAAGGATCATCAGAAGAGGTTTTGGCTGCTATTCTATTTGAATGTACTTCTATACAGGTAACACAGAACGATGTTCTATCCCAACACATTTGTCACAGCTGTGTCGAAAAACTGGCCATGTGCTATTTATACCGAAAACTCTGCCATGAcacacaaaataaattgaaatgccTTTACGAAAATAATATCAACAAGCCAGAAAGTACTTTATCTATTGACGCTTCCATTGAACACCTGGATGACACGGACATTGAAATCTCCTCCGTACCTTCGGAGGCAAACGTAGAAAAAGTCTTGACCTGCAAGCTTTGTGATAAAACCTACAAATCTCAACAATCACTCAGGAAACACATGACAATTCATGAGAATCCAGAGAATCTACAATGTCCAACGTGCCATAAACAGTTTACCAGAAAAACCGACGTGAAAAGACATCAAAGTCTGCATACTGGAGAGAGGCCTTATAACTGTGTTCTTTGCAACAGTTCGTTTACACAGTCAGGGAATTTGAGTACACATATGAAAGAAAAACACTCAGTCGCGAAACAGGACTGTGATAGTCAAAAGGGAACGACGTATTTATGCTGCATATGTGGAGCAGGTTTTAAATATCAATGTTCATTAAAATTACACCTGCGAAGACATTCAGGAGACAGGCCTTTCAAGTGCACAAACTGTGATTATAGCTTCGTAACTAATGCACGACTTCGTTCTCATATGCGAGTACATACGGGAGAACGACCATTCATTTGCAAAGTTTGTACCAAAAGTTTTTCTCATGTGAACGTTTTGAGGCGACATATGCAGTGTCATATGAACACTAAAATCCATAACTGTGTCTACTGCgataaaaagttttatacacCGTATGACTTGAATATTCATCTCAGAAGCCATACCGGAGAGAGACCACTAATCTGCAAAACATGCGGCAAAACCTTCGCCTGTCCCAAAAATTTTTCCCAGCATGAAAAAACCCACACCGATGAAAAACCTCACCTATGTATGATATGTGGAAAATCCTTCAGAAGATTATATCATTTGAAGCTACACATGAAAGTTCATGGCTCTAAagtttaa
- Protein Sequence
- MNRLPMQVELNAETICRTCMACDTNLTSLFSVLGFLNKEGSSEEVLAAILFECTSIQVTQNDVLSQHICHSCVEKLAMCYLYRKLCHDTQNKLKCLYENNINKPESTLSIDASIEHLDDTDIEISSVPSEANVEKVLTCKLCDKTYKSQQSLRKHMTIHENPENLQCPTCHKQFTRKTDVKRHQSLHTGERPYNCVLCNSSFTQSGNLSTHMKEKHSVAKQDCDSQKGTTYLCCICGAGFKYQCSLKLHLRRHSGDRPFKCTNCDYSFVTNARLRSHMRVHTGERPFICKVCTKSFSHVNVLRRHMQCHMNTKIHNCVYCDKKFYTPYDLNIHLRSHTGERPLICKTCGKTFACPKNFSQHEKTHTDEKPHLCMICGKSFRRLYHLKLHMKVHGSKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -